RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 RAB19A4D1S5 217 aa7.26□□□□□ -1.25
LIMCH1-214ENST00000512228 H2AFB1P0C5Y9 115 aa7.26□□□□□ -1.25
LIMCH1-214ENST00000512228 RPL35P42766 123 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-214ENST00000512228 TOR2AQ5JU69 321 aa7.26□□□□□ -1.25
LIMCH1-214ENST00000512228 C15orf54Q8N8G6 183 aa7.26□□□□□ -1.25
LIMCH1-214ENST00000512228 DEFB104AQ8WTQ1 72 aa7.26□□□□□ -1.25
LIMCH1-214ENST00000512228 URGCP-MRPS24S4R325 110 aa7.26□□□□□ -1.25
LIMCH1-214ENST00000512228 A0A087WX48 190 aa7.25□□□□□ -1.25
LIMCH1-214ENST00000512228 OR5AL1P0C617 328 aa7.25□□□□□ -1.25
LIMCH1-214ENST00000512228 SULT1A2P50226 295 aa7.25□□□□□ -1.25
LIMCH1-214ENST00000512228 ZNF56Q15929 161 aa7.25□□□□□ -1.25
LIMCH1-214ENST00000512228 CIRBP-AS1Q8TBR5 109 aa7.25□□□□□ -1.25
LIMCH1-214ENST00000512228 F5H697 171 aa7.24□□□□□ -1.25
LIMCH1-214ENST00000512228 S100A9P06702 114 aaKnown RBP7.24□□□□□ -1.25
LIMCH1-214ENST00000512228 CXCL1P09341 107 aa7.24□□□□□ -1.25
LIMCH1-214ENST00000512228 GNG13Q9P2W3 67 aa7.24□□□□□ -1.25
LIMCH1-214ENST00000512228 DMBT1Q9UGM3 2413 aaPredicted RBP7.24□□□□□ -1.25
LIMCH1-214ENST00000512228 PANO1I0J062 215 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 M0QY20 66 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 PRSS1P07477 247 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 IGLC6P0CF74 106 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 GAGE6Q13070 117 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 SPANXN1Q5VSR9 72 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 CLPSL2Q6UWE3 100 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 C11orf52Q96A22 123 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 CHAC1Q9BUX1 264 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 VAX2Q9UIW0 290 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 COX11Q9Y6N1 276 aa7.23□□□□□ -1.25
LIMCH1-214ENST00000512228 TRBV20OR9-2A0A075B6H5 130 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 TRAV1-1A0A0B4J248 108 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 C19orf71A6NCJ1 209 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 ANGP03950 147 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 NKX2-5P52952 324 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 RBX1P62877 108 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 CENPWQ5EE01 88 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 RMI2Q96E14 147 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 CHCHD5Q9BSY4 110 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 CHCHD7Q9BUK0 85 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 GFRA4Q9GZZ7 299 aa7.22□□□□□ -1.25
LIMCH1-214ENST00000512228 KRTAP29-1A8MX34 341 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 USP17L23D6RBM5 183 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 PLA2G1BP04054 148 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 TAGLN2P37802 199 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 HNRNPA3P51991 378 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 BLOC1S1P78537 153 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 Q0VG73 95 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 ELOBQ15370 118 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 SUMO4Q6EEV6 95 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 LINC00269Q8N2A0 174 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 MANBALQ9NQG1 85 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 PRR34Q9NV39 138 aa7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 LRP1Q07954 4544 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-214ENST00000512228 J3QL48 77 aa7.2□□□□□ -1.26
LIMCH1-214ENST00000512228 IFNA1P01562 189 aa7.2□□□□□ -1.26
LIMCH1-214ENST00000512228 SLPIP03973 132 aa7.2□□□□□ -1.26
LIMCH1-214ENST00000512228 OR2D3Q8NGH3 330 aa7.2□□□□□ -1.26
LIMCH1-214ENST00000512228 TPPP3Q9BW30 176 aa7.2□□□□□ -1.26
LIMCH1-214ENST00000512228 C1orf43Q9BWL3 253 aa7.2□□□□□ -1.26
LIMCH1-214ENST00000512228 IGLV4-60A0A075B6I1 120 aa7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 HLA-DQA1P01909 254 aa7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 MGPP08493 103 aa7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 LYZL1Q6UWQ5 148 aa7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 ALKAL2Q6UX46 152 aa7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 FER1L6-AS1Q8NA97 138 aa7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 C20orf203Q8NBC4 194 aa7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-214ENST00000512228 IGLV10-54A0A075B6I4 117 aa7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 NTF3P20783 257 aa7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 FOXA3P55318 350 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 IQCJQ1A5X6 159 aa7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 KCNIP4Q6PIL6 250 aa7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 SDIM1Q6ZPB5 146 aa7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 NUDT10Q8NFP7 164 aa7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 DAZAP1Q96EP5 407 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 NUDT11Q96G61 164 aa7.18□□□□□ -1.26
LIMCH1-214ENST00000512228 K7EN84 100 aa7.17□□□□□ -1.26
LIMCH1-214ENST00000512228 CRPP02741 224 aa7.17□□□□□ -1.26
LIMCH1-214ENST00000512228 MIAQ16674 131 aa7.17□□□□□ -1.26
LIMCH1-214ENST00000512228 TEX261Q6UWH6 196 aa7.17□□□□□ -1.26
LIMCH1-214ENST00000512228 C9orf163Q8N9P6 203 aa7.17□□□□□ -1.26
LIMCH1-214ENST00000512228 MED9Q9NWA0 146 aa7.17□□□□□ -1.26
LIMCH1-214ENST00000512228 TRBV25-1A0A075B6N4 114 aa7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 SMIM17P0DL12 118 aa7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 GNG4P50150 75 aa7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 MEF2BQ02080 365 aaPredicted RBP7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 REG3AQ06141 175 aa7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 LYPD6BQ8NI32 183 aa7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 OCC1Q8TAD7 63 aa7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 AP1S3Q96PC3 154 aa7.16□□□□□ -1.26
LIMCH1-214ENST00000512228 TRAV26-2A0A0B4J265 109 aa7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 IGHV1-24A0A0C4DH33 117 aa7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 RPS20P60866 119 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 CACNG7P62955 275 aa7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 RASL11AQ6T310 242 aa7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 GATD1Q8NB37 220 aa7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 GTSF1Q8WW33 167 aa7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 RNASE7Q9H1E1 156 aaKnown RBP7.15□□□□□ -1.26
LIMCH1-214ENST00000512228 PDE6DO43924 150 aa7.14□□□□□ -1.27
LIMCH1-214ENST00000512228 NDUFS6O75380 124 aaKnown RBP7.14□□□□□ -1.27
LIMCH1-214ENST00000512228 GAS8-AS1O95177 125 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms