RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 DYNC2H1Q8NCM8 4307 aaKnown RBP10.09□□□□□ -0.79
BRCA1-223ENST00000494123 FAM104BQ5XKR9 115 aa10.09□□□□□ -0.79
BRCA1-223ENST00000494123 ATRAIDQ6UW56 229 aa10.09□□□□□ -0.79
BRCA1-223ENST00000494123 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.09□□□□□ -0.79
BRCA1-223ENST00000494123 GATD1Q8NB37 220 aa10.09□□□□□ -0.79
BRCA1-223ENST00000494123 ATP6V0E2Q8NHE4 81 aa10.09□□□□□ -0.79
BRCA1-223ENST00000494123 RNF185Q96GF1 192 aa10.09□□□□□ -0.79
BRCA1-223ENST00000494123 DNAJC30Q96LL9 226 aa10.09□□□□□ -0.79
BRCA1-223ENST00000494123 LY6G6CO95867 125 aa10.08□□□□□ -0.8
BRCA1-223ENST00000494123 FRZBQ92765 325 aa10.08□□□□□ -0.8
BRCA1-223ENST00000494123 MRAP2Q96G30 205 aa10.08□□□□□ -0.8
BRCA1-223ENST00000494123 NIT2Q9NQR4 276 aa10.08□□□□□ -0.8
BRCA1-223ENST00000494123 LINC00694P0DN24 101 aa10.07□□□□□ -0.8
BRCA1-223ENST00000494123 ESRGQ1W209 222 aa10.07□□□□□ -0.8
BRCA1-223ENST00000494123 LGALS9CQ6DKI2 356 aa10.07□□□□□ -0.8
BRCA1-223ENST00000494123 LYPD5Q6UWN5 251 aa10.07□□□□□ -0.8
BRCA1-223ENST00000494123 LINC00476Q8WZB0 136 aa10.07□□□□□ -0.8
BRCA1-223ENST00000494123 UBE2D3P61077 147 aa10.07□□□□□ -0.8
BRCA1-223ENST00000494123 UBE2D2P62837 147 aa10.07□□□□□ -0.8
BRCA1-223ENST00000494123 MRPL51Q4U2R6 128 aaKnown RBP10.07□□□□□ -0.8
BRCA1-223ENST00000494123 NCR2O95944 276 aa10.06□□□□□ -0.8
BRCA1-223ENST00000494123 CKS2P33552 79 aa10.06□□□□□ -0.8
BRCA1-223ENST00000494123 OR10J3Q5JRS4 329 aa10.06□□□□□ -0.8
BRCA1-223ENST00000494123 RPL39LQ96EH5 51 aaKnown RBP10.06□□□□□ -0.8
BRCA1-223ENST00000494123 GTSF1LQ9H1H1 148 aa10.06□□□□□ -0.8
BRCA1-223ENST00000494123 LINC00588Q9Y4M8 146 aa10.06□□□□□ -0.8
BRCA1-223ENST00000494123 PLECQ15149 4684 aaKnown RBP10.06□□□□□ -0.8
BRCA1-223ENST00000494123 SMKR1H3BMG3 65 aa10.05□□□□□ -0.8
BRCA1-223ENST00000494123 ELOBQ15370 118 aa10.05□□□□□ -0.8
BRCA1-223ENST00000494123 SMCO4Q9NRQ5 59 aa10.05□□□□□ -0.8
BRCA1-223ENST00000494123 TGIF2-C20orf24A0A0A6YYL0 155 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 IGHV3-38A0A0C4DH36 116 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 PPP1R17O96001 155 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 COX19Q49B96 90 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 DAZ4Q86SG3 579 aaKnown RBP10.04□□□□□ -0.8
BRCA1-223ENST00000494123 CBLN2Q8IUK8 224 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 DAZ3Q9NR90 486 aaKnown RBP10.04□□□□□ -0.8
BRCA1-223ENST00000494123 LCE6AA0A183 80 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 GAS8-AS1O95177 125 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 TIRAPP58753 221 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 TMEM136Q6ZRR5 245 aa10.04□□□□□ -0.8
BRCA1-223ENST00000494123 MRPS16Q9Y3D3 137 aaKnown RBP10.04□□□□□ -0.8
BRCA1-223ENST00000494123 D6R8Y8 96 aa10.03□□□□□ -0.8
BRCA1-223ENST00000494123 HLA-DQA1P01909 254 aa10.03□□□□□ -0.8
BRCA1-223ENST00000494123 PPBPP02775 128 aa10.03□□□□□ -0.8
BRCA1-223ENST00000494123 GNB1LQ9BYB4 327 aa10.03□□□□□ -0.8
BRCA1-223ENST00000494123 ST20Q9HBF5 79 aa10.03□□□□□ -0.8
BRCA1-223ENST00000494123 TRBV24-1A0A075B6N3 115 aa10.02□□□□□ -0.81
BRCA1-223ENST00000494123 RPS10P46783 165 aaKnown RBP10.02□□□□□ -0.81
BRCA1-223ENST00000494123 ORMDL3Q8N138 153 aa10.02□□□□□ -0.81
BRCA1-223ENST00000494123 TRAV8-6A0A0B4J262 113 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 TRBV6-5A0A0K0K1A5 114 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 SDHAF1A6NFY7 115 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 ATP6V1G1O75348 118 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 APCSP02743 223 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 MT-ND6P03923 174 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 TMEM97Q5BJF2 176 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 LELP1Q5T871 98 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 UPK3BQ9BT76 320 aa10.01□□□□□ -0.81
BRCA1-223ENST00000494123 S100A1P23297 94 aa10□□□□□ -0.81
BRCA1-223ENST00000494123 NRACQ8N912 160 aa10□□□□□ -0.81
BRCA1-223ENST00000494123 PRELID3AQ96N28 172 aa10□□□□□ -0.81
BRCA1-223ENST00000494123 TNFRSF6BO95407 300 aa10□□□□□ -0.81
BRCA1-223ENST00000494123 SIVA1O15304 175 aa9.99□□□□□ -0.81
BRCA1-223ENST00000494123 PMCHP20382 165 aa9.99□□□□□ -0.81
BRCA1-223ENST00000494123 SUMO2P61956 95 aaKnown RBP9.99□□□□□ -0.81
BRCA1-223ENST00000494123 COTL1Q14019 142 aa9.99□□□□□ -0.81
BRCA1-223ENST00000494123 YPEL4Q96NS1 127 aa9.99□□□□□ -0.81
BRCA1-223ENST00000494123 TMEM70Q9BUB7 260 aa9.99□□□□□ -0.81
BRCA1-223ENST00000494123 MRPL18Q9H0U6 180 aaKnown RBP9.99□□□□□ -0.81
BRCA1-223ENST00000494123 Q9H8V8 135 aa9.99□□□□□ -0.81
BRCA1-223ENST00000494123 TRBV6-8A0A0A6YYG3 113 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 I3L3M4 83 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 NPYP01303 97 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 KIAA1644Q3SXP7 199 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 WFDC10BQ8IUB3 73 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 DEFB104AQ8WTQ1 72 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 LYSTQ99698 3801 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 C20orf78Q9BR46 151 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 LAMTOR2Q9Y2Q5 125 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 TRAPPC1Q9Y5R8 145 aa9.98□□□□□ -0.81
BRCA1-223ENST00000494123 IGLV2-18A0A075B6J9 118 aa9.97□□□□□ -0.81
BRCA1-223ENST00000494123 TRBV25-1A0A075B6N4 114 aa9.97□□□□□ -0.81
BRCA1-223ENST00000494123 PHOX2AO14813 284 aa9.97□□□□□ -0.81
BRCA1-223ENST00000494123 FABP9Q0Z7S8 132 aa9.97□□□□□ -0.81
BRCA1-223ENST00000494123 ALMS1Q8TCU4 4167 aa9.97□□□□□ -0.81
BRCA1-223ENST00000494123 IGHV1-24A0A0C4DH33 117 aa9.96□□□□□ -0.81
BRCA1-223ENST00000494123 VCYO14598 125 aa9.96□□□□□ -0.81
BRCA1-223ENST00000494123 SCO1O75880 301 aa9.96□□□□□ -0.81
BRCA1-223ENST00000494123 POLR2KP53803 58 aaKnown RBP9.96□□□□□ -0.81
BRCA1-223ENST00000494123 TRBV27A0A0K0K1C4 114 aa9.96□□□□□ -0.82
BRCA1-223ENST00000494123 AMTP48728 403 aa9.96□□□□□ -0.82
BRCA1-223ENST00000494123 NTM-AS1Q6ZSK4 140 aa9.96□□□□□ -0.82
BRCA1-223ENST00000494123 CHCHD5Q9BSY4 110 aa9.96□□□□□ -0.82
BRCA1-223ENST00000494123 FCER1GP30273 86 aa9.95□□□□□ -0.82
BRCA1-223ENST00000494123 KIR2DL4Q99706 377 aa9.95□□□□□ -0.82
BRCA1-223ENST00000494123 MAP1LC3AQ9H492 121 aa9.95□□□□□ -0.82
BRCA1-223ENST00000494123 RPL32P62910 135 aaKnown RBP9.94□□□□□ -0.82
BRCA1-223ENST00000494123 IQCJQ1A5X6 159 aa9.94□□□□□ -0.82
BRCA1-223ENST00000494123 SMIM2Q9BVW6 85 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms