RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 KRTAP4-5Q9BYR2 181 aa6.33□□□□□ -1.4
HDAC3-212ENST00000492407 RCL1Q9Y2P8 373 aaKnown RBP6.33□□□□□ -1.4
HDAC3-212ENST00000492407 MUC4Q99102 2169 aa6.33□□□□□ -1.4
HDAC3-212ENST00000492407 LRP1BQ9NZR2 4599 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 DNAH5Q8TE73 4624 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 HSPG2P98160 4391 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 UMAD1C9J7I0 102 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 SLC25A5P05141 298 aaKnown RBP6.32□□□□□ -1.4
HDAC3-212ENST00000492407 CXCL1P09341 107 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 ARL16Q0P5N6 197 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 PNRC1Q12796 327 aaPredicted RBP6.32□□□□□ -1.4
HDAC3-212ENST00000492407 PDE6HQ13956 83 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 ADIRFQ15847 76 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 ESRGQ1W209 222 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 ANXA2RQ3ZCQ2 193 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 OR10G7Q8NGN6 311 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 LINC00477Q96M19 166 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 ST20Q9HBF5 79 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 TMEM14CQ9P0S9 112 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 WDR83OSQ9Y284 106 aa6.32□□□□□ -1.4
HDAC3-212ENST00000492407 C7orf71A4D174 169 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 PRAC2D3DTV9 90 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 USP17L23D6RBM5 183 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 F8W1H4 67 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 RHODO00212 210 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 GPX1P07203 203 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 PFN1P07737 140 aaKnown RBP6.31□□□□□ -1.4
HDAC3-212ENST00000492407 HINT1P49773 126 aaPredicted RBP6.31□□□□□ -1.4
HDAC3-212ENST00000492407 CD164Q04900 197 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 PMCHL1Q16048 86 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 C4orf26Q17RF5 130 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 C1orf195Q5TG92 126 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 SPATA12Q7Z6I5 190 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 ATP6V0E2Q8NHE4 81 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 FAM19A4Q96LR4 140 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 PRADC1Q9BSG0 188 aa6.31□□□□□ -1.4
HDAC3-212ENST00000492407 TRBV19A0A075B6N1 114 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 TRAV12-3A0A0B4J271 114 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 KLLNB2CW77 178 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 H3BRM9 83 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 MPDU1O75352 247 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 ZNF324O75467 553 aaPredicted RBP6.3□□□□□ -1.4
HDAC3-212ENST00000492407 CRISP2P16562 243 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 NTF3P20783 257 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 KIR3DS1Q14943 382 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 SPATA45Q537H7 98 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 IBA57Q5T440 356 aaKnown RBP6.3□□□□□ -1.4
HDAC3-212ENST00000492407 FAM19A1Q7Z5A9 133 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 BORCS7Q96B45 105 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 AP1S3Q96PC3 154 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 TMEM70Q9BUB7 260 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 MDFICQ9P1T7 246 aa6.3□□□□□ -1.4
HDAC3-212ENST00000492407 TRGV2A0A075B6R0 118 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 A0A096LPF7 62 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 A0A0J9YY99 117 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 C9orf118A6NHY6 69 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 TMEM250H0YL14 139 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 SPINK4O60575 86 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 GNG5P63218 68 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 HBG1P69891 147 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 HBG2P69892 147 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 MORN5Q5VZ52 161 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 Q6ZTI0 123 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 C11orf72Q8NBR9 251 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 TVP23CQ96ET8 276 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 VSIG2Q96IQ7 327 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 C2orf50Q96LR7 162 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 KRTAP1-5Q9BYS1 174 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 C11orf1Q9H5F2 150 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 SLC39A9Q9NUM3 307 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 PAM16Q9Y3D7 125 aa6.29□□□□□ -1.4
HDAC3-212ENST00000492407 TMEM262E9PQX1 116 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 NDUFV3P56181 108 aaKnown RBP6.28□□□□□ -1.4
HDAC3-212ENST00000492407 IL15RAQ13261 267 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 MEIG1Q5JSS6 88 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 MIC13Q5XKP0 118 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 C9orf47Q6ZRZ4 202 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 NFE4Q86UQ8 179 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 PLEKHB2Q96CS7 222 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 TM2D2Q9BX73 214 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 SCRT2Q9NQ03 307 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 TIMM9Q9Y5J7 89 aa6.28□□□□□ -1.4
HDAC3-212ENST00000492407 APOBP04114 4563 aaKnown RBP6.28□□□□□ -1.4
HDAC3-212ENST00000492407 TRAV5A0A0B4J249 113 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 H3BTX0 84 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 CST7O76096 145 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 NDUFB4O95168 129 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 GCSHP23434 173 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 RPL13AP40429 203 aaKnown RBP6.27□□□□□ -1.41
HDAC3-212ENST00000492407 Q0VG73 95 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 Q6AWC8 147 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 RASL11AQ6T310 242 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 Q6ZRN7 208 aaPredicted RBP6.27□□□□□ -1.41
HDAC3-212ENST00000492407 TMEM252Q8N6L7 170 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 PMCHL2Q9BQD1 86 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 AGPAT4-IT1Q9H0P7 198 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 AAMDCQ9H7C9 122 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 PRO0255Q9UI72 69 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 ICOSQ9Y6W8 199 aa6.27□□□□□ -1.41
HDAC3-212ENST00000492407 TRAV9-2A0A087WT02 112 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms