RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 GAGE4Q13068 117 aa13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 GAGE5Q13069 117 aa13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 GAGE13Q4V321 117 aa13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 FAM104BQ5XKR9 115 aa13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 DAZ4Q86SG3 579 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 LINC00476Q8WZB0 136 aa13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 DAZ3Q9NR90 486 aaKnown RBP13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 STARD9Q9P2P6 4700 aa13.78□□□□□ -0.2
SHROOM3-209ENST00000490690 PPBPP02775 128 aa13.77□□□□□ -0.21
SHROOM3-209ENST00000490690 NEXN-AS1Q8NBZ9 246 aa13.77□□□□□ -0.21
SHROOM3-209ENST00000490690 ZNRF2Q8NHG8 242 aa13.77□□□□□ -0.21
SHROOM3-209ENST00000490690 GTSF1LQ9H1H1 148 aa13.77□□□□□ -0.21
SHROOM3-209ENST00000490690 LOC100131303A0A0U1RQF7 123 aa13.76□□□□□ -0.21
SHROOM3-209ENST00000490690 LINC00694P0DN24 101 aa13.76□□□□□ -0.21
SHROOM3-209ENST00000490690 RAB4AP20338 218 aa13.76□□□□□ -0.21
SHROOM3-209ENST00000490690 AMN1Q8IY45 258 aa13.76□□□□□ -0.21
SHROOM3-209ENST00000490690 UBE2D3P61077 147 aa13.75□□□□□ -0.21
SHROOM3-209ENST00000490690 UBE2D2P62837 147 aa13.75□□□□□ -0.21
SHROOM3-209ENST00000490690 UPK3BQ9BT76 320 aa13.75□□□□□ -0.21
SHROOM3-209ENST00000490690 MRPS16Q9Y3D3 137 aaKnown RBP13.75□□□□□ -0.21
SHROOM3-209ENST00000490690 URGCP-MRPS24S4R325 110 aa13.75□□□□□ -0.21
SHROOM3-209ENST00000490690 LCE6AA0A183 80 aa13.74□□□□□ -0.21
SHROOM3-209ENST00000490690 LY6G6CO95867 125 aa13.74□□□□□ -0.21
SHROOM3-209ENST00000490690 MT-ND6P03923 174 aa13.74□□□□□ -0.21
SHROOM3-209ENST00000490690 LYPD5Q6UWN5 251 aa13.74□□□□□ -0.21
SHROOM3-209ENST00000490690 TRAV8-6A0A0B4J262 113 aa13.73□□□□□ -0.21
SHROOM3-209ENST00000490690 HLA-DQA1P01909 254 aa13.73□□□□□ -0.21
SHROOM3-209ENST00000490690 ESRGQ1W209 222 aa13.73□□□□□ -0.21
SHROOM3-209ENST00000490690 OR10J3Q5JRS4 329 aa13.73□□□□□ -0.21
SHROOM3-209ENST00000490690 RNF185Q96GF1 192 aa13.73□□□□□ -0.21
SHROOM3-209ENST00000490690 SMCO4Q9NRQ5 59 aa13.73□□□□□ -0.21
SHROOM3-209ENST00000490690 TRBV6-5A0A0K0K1A5 114 aa13.72□□□□□ -0.21
SHROOM3-209ENST00000490690 CKS2P33552 79 aa13.72□□□□□ -0.21
SHROOM3-209ENST00000490690 LELP1Q5T871 98 aa13.72□□□□□ -0.21
SHROOM3-209ENST00000490690 LAMTOR2Q9Y2Q5 125 aa13.72□□□□□ -0.21
SHROOM3-209ENST00000490690 PHOX2AO14813 284 aa13.71□□□□□ -0.21
SHROOM3-209ENST00000490690 PKIAP61925 76 aa13.71□□□□□ -0.21
SHROOM3-209ENST00000490690 GNB1LQ9BYB4 327 aa13.71□□□□□ -0.21
SHROOM3-209ENST00000490690 LINC00588Q9Y4M8 146 aa13.71□□□□□ -0.21
SHROOM3-209ENST00000490690 TRBV24-1A0A075B6N3 115 aa13.7□□□□□ -0.22
SHROOM3-209ENST00000490690 TRAV26-2A0A0B4J265 109 aa13.7□□□□□ -0.22
SHROOM3-209ENST00000490690 K7EP13 123 aa13.7□□□□□ -0.22
SHROOM3-209ENST00000490690 MRPL51Q4U2R6 128 aaKnown RBP13.7□□□□□ -0.22
SHROOM3-209ENST00000490690 ORMDL3Q8N138 153 aa13.7□□□□□ -0.22
SHROOM3-209ENST00000490690 ST20Q9HBF5 79 aa13.7□□□□□ -0.22
SHROOM3-209ENST00000490690 TENM2Q9NT68 2774 aa13.69□□□□□ -0.22
SHROOM3-209ENST00000490690 PLECQ15149 4684 aaKnown RBP13.68□□□□□ -0.22
SHROOM3-209ENST00000490690 TCAPO15273 167 aa13.68□□□□□ -0.22
SHROOM3-209ENST00000490690 ELOBQ15370 118 aa13.68□□□□□ -0.22
SHROOM3-209ENST00000490690 C20orf78Q9BR46 151 aa13.68□□□□□ -0.22
SHROOM3-209ENST00000490690 SDHAF1A6NFY7 115 aa13.67□□□□□ -0.22
SHROOM3-209ENST00000490690 NCR2O95944 276 aa13.67□□□□□ -0.22
SHROOM3-209ENST00000490690 S100A1P23297 94 aa13.67□□□□□ -0.22
SHROOM3-209ENST00000490690 COTL1Q14019 142 aa13.67□□□□□ -0.22
SHROOM3-209ENST00000490690 TTC32Q5I0X7 151 aa13.67□□□□□ -0.22
SHROOM3-209ENST00000490690 TRAV9-2A0A087WT02 112 aa13.66□□□□□ -0.22
SHROOM3-209ENST00000490690 D6R8Y8 96 aa13.66□□□□□ -0.22
SHROOM3-209ENST00000490690 SIVA1O15304 175 aa13.66□□□□□ -0.22
SHROOM3-209ENST00000490690 TMEM136Q6ZRR5 245 aa13.66□□□□□ -0.22
SHROOM3-209ENST00000490690 Q9H8V8 135 aa13.66□□□□□ -0.22
SHROOM3-209ENST00000490690 Q9UF83 564 aa13.66□□□□□ -0.22
SHROOM3-209ENST00000490690 TRBV25-1A0A075B6N4 114 aa13.65□□□□□ -0.22
SHROOM3-209ENST00000490690 TRBV6-8A0A0A6YYG3 113 aa13.65□□□□□ -0.22
SHROOM3-209ENST00000490690 I3L3M4 83 aa13.65□□□□□ -0.22
SHROOM3-209ENST00000490690 APCSP02743 223 aa13.65□□□□□ -0.22
SHROOM3-209ENST00000490690 SUMO2P61956 95 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-209ENST00000490690 RPL32P62910 135 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-209ENST00000490690 RPL39LQ96EH5 51 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-209ENST00000490690 VCYO14598 125 aa13.64□□□□□ -0.23
SHROOM3-209ENST00000490690 PMCHP20382 165 aa13.64□□□□□ -0.23
SHROOM3-209ENST00000490690 ATRAIDQ6UW56 229 aa13.64□□□□□ -0.23
SHROOM3-209ENST00000490690 PRELID3AQ96N28 172 aa13.64□□□□□ -0.23
SHROOM3-209ENST00000490690 KIR2DL4Q99706 377 aa13.64□□□□□ -0.23
SHROOM3-209ENST00000490690 CHCHD7Q9BUK0 85 aa13.64□□□□□ -0.23
SHROOM3-209ENST00000490690 IGHV1-24A0A0C4DH33 117 aa13.63□□□□□ -0.23
SHROOM3-209ENST00000490690 C10orf126Q8N4M7 172 aa13.63□□□□□ -0.23
SHROOM3-209ENST00000490690 NRACQ8N912 160 aa13.63□□□□□ -0.23
SHROOM3-209ENST00000490690 TMEM70Q9BUB7 260 aa13.63□□□□□ -0.23
SHROOM3-209ENST00000490690 TGIF2-C20orf24A0A0A6YYL0 155 aa13.62□□□□□ -0.23
SHROOM3-209ENST00000490690 IGHV3-38A0A0C4DH36 116 aa13.62□□□□□ -0.23
SHROOM3-209ENST00000490690 TRBV27A0A0K0K1C4 114 aa13.62□□□□□ -0.23
SHROOM3-209ENST00000490690 TNFRSF6BO95407 300 aa13.62□□□□□ -0.23
SHROOM3-209ENST00000490690 BTF3P20290 206 aaKnown RBP13.62□□□□□ -0.23
SHROOM3-209ENST00000490690 IQCJQ1A5X6 159 aa13.62□□□□□ -0.23
SHROOM3-209ENST00000490690 SMKR1H3BMG3 65 aa13.61□□□□□ -0.23
SHROOM3-209ENST00000490690 RPS10P46783 165 aaKnown RBP13.61□□□□□ -0.23
SHROOM3-209ENST00000490690 POLR2KP53803 58 aaKnown RBP13.61□□□□□ -0.23
SHROOM3-209ENST00000490690 ALMS1Q8TCU4 4167 aa13.61□□□□□ -0.23
SHROOM3-209ENST00000490690 DNAH10OSP0CZ25 163 aa13.6□□□□□ -0.23
SHROOM3-209ENST00000490690 SMAGPQ0VAQ4 97 aa13.6□□□□□ -0.23
SHROOM3-209ENST00000490690 LINC01556Q5JQF7 62 aa13.6□□□□□ -0.23
SHROOM3-209ENST00000490690 MAP1LC3AQ9H492 121 aa13.6□□□□□ -0.23
SHROOM3-209ENST00000490690 TRAPPC1Q9Y5R8 145 aa13.6□□□□□ -0.23
SHROOM3-209ENST00000490690 H7C423 109 aa13.59□□□□□ -0.23
SHROOM3-209ENST00000490690 UBE2L6O14933 153 aa13.59□□□□□ -0.23
SHROOM3-209ENST00000490690 FCER1GP30273 86 aa13.59□□□□□ -0.23
SHROOM3-209ENST00000490690 AMTP48728 403 aa13.59□□□□□ -0.23
SHROOM3-209ENST00000490690 CBLN2Q8IUK8 224 aa13.59□□□□□ -0.23
SHROOM3-209ENST00000490690 CHCHD5Q9BSY4 110 aa13.59□□□□□ -0.23
SHROOM3-209ENST00000490690 TMEM243Q9BU79 118 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms