RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 KDM5AP29375 1690 aaKnown RBP1.92□□□□□ -2.1
HMGB1P38-201ENST00000490557 TNRC6AQ8NDV7 1962 aaKnown RBP1.92□□□□□ -2.1
HMGB1P38-201ENST00000490557 BAZ2BQ9UIF8 2168 aaKnown RBP1.92□□□□□ -2.1
HMGB1P38-201ENST00000490557 ABCC3O15438 1527 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 COL4A2P08572 1712 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 KIAA0100Q14667 2235 aaKnown RBP1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 FREM1Q5H8C1 2179 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 KRTAP5-8O75690 187 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 IGLV3-1P01715 115 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 UBE2D1P51668 147 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 SERP2Q8N6R1 65 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 TRGV9Q99603 122 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 KDM6BO15054 1643 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 ALPK2Q86TB3 2170 aa1.91□□□□□ -2.1
HMGB1P38-201ENST00000490557 PLXNA2O75051 1894 aa1.9□□□□□ -2.1
HMGB1P38-201ENST00000490557 COL4A5P29400 1685 aa1.9□□□□□ -2.1
HMGB1P38-201ENST00000490557 ADAMTS7Q9UKP4 1686 aa1.9□□□□□ -2.1
HMGB1P38-201ENST00000490557 TRBV7-3A0A075B6L6 115 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 TEX49A0A1B0GTD5 131 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 NMBP08949 121 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 TRAPPC2P0DI81 140 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 TRAPPC2BP0DI82 140 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 LINC00322Q6ZN03 302 aaPredicted RBP1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 AMELYQ99218 206 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 C20orf78Q9BR46 151 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 CACFD1Q9UGQ2 172 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 RABAC1Q9UI14 185 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 SNURFQ9Y675 71 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 DOCK10Q96BY6 2186 aa1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 PRDM15P57071 1507 aaPredicted RBP1.9□□□□□ -2.11
HMGB1P38-201ENST00000490557 ARAP2Q8WZ64 1704 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 APOC3P02656 99 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 SSBP1Q04837 148 aaKnown RBP1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 SPATA45Q537H7 98 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 ZNF720Q7Z2F6 126 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 C20orf197Q8N268 126 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 UQCR10Q9UDW1 63 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 PRO1854Q9UHT4 67 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 FN1P02751 2386 aaKnown RBP1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 KDM5DQ9BY66 1539 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 LTBP2Q14767 1821 aa1.89□□□□□ -2.11
HMGB1P38-201ENST00000490557 BAHCC1Q9P281 2608 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 PLXNA4Q9HCM2 1894 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 PLIN4Q96Q06 1357 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 MED13Q9UHV7 2174 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 PTPRFP10586 1907 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 SYS1-DBNDD2H3BUS1 97 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 INE1O15225 51 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 RPL37AP61513 92 aaKnown RBP1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 TDRG1Q3Y452 100 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 FAM167A-AS1Q96KT0 104 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 NXT2Q9NPJ8 142 aaKnown RBP1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 MED9Q9NWA0 146 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 ABCA3Q99758 1704 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 TNS1Q9HBL0 1735 aaKnown RBP1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 MARF1Q9Y4F3 1742 aaKnown RBP1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 DOCK1Q14185 1865 aa1.88□□□□□ -2.11
HMGB1P38-201ENST00000490557 TRGV2A0A075B6R0 118 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 LOC101927531A0A1B0GV80 90 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 CHKB-CPT1BH3BT56 60 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 EDDM3BP56851 147 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 ELOF1P60002 83 aaKnown RBP1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 ADIRFQ15847 76 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 ZNF56Q15929 161 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 ALKAL2Q6UX46 152 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 Q6ZRN7 208 aaPredicted RBP1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 PPP1R1CQ8WVI7 109 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 LAMB1P07942 1786 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 MAGI2Q86UL8 1455 aa1.87□□□□□ -2.11
HMGB1P38-201ENST00000490557 ARFGEF3Q5TH69 2177 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 CHD3Q12873 2000 aaKnown RBP1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 LAMC3Q9Y6N6 1575 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 CEP192Q8TEP8 1941 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 MUC22E2RYF6 1773 aaPredicted RBP1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 IGLC7A0M8Q6 106 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 M0R2N4 97 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 COX6CP09669 75 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 IL9P15248 144 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 UBE2D3P61077 147 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 UBE2D2P62837 147 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 FAM74A4Q5TZK3 123 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 Q8N6K4 173 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 DYNLRB1Q9NP97 96 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 TOPAZ1Q8N9V7 1692 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 MAP3K1Q13233 1512 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 ARHGEF12Q9NZN5 1544 aa1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 MDC1Q14676 2089 aaKnown RBP1.86□□□□□ -2.11
HMGB1P38-201ENST00000490557 ZGRF1Q86YA3 2104 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 CEP162Q5TB80 1403 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 TRAV22A0A0B4J277 110 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 A0A0G2JND7 137 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 MRPS14O60783 128 aaKnown RBP1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 PPP1R17O96001 155 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 CCL3L1P16619 93 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 KRTAP12-1P59990 96 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 COX7B2Q8TF08 81 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 LENEPQ9Y5L5 61 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 SPCS1Q9Y6A9 102 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 ICE1Q9Y2F5 2266 aa1.85□□□□□ -2.11
HMGB1P38-201ENST00000490557 CACNA1GO43497 2377 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms