RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 WFDC10BQ8IUB3 73 aa5.59□□□□□ -1.52
SYNE1-228ENST00000490135 LINC01561Q8N1V8 128 aa5.59□□□□□ -1.52
SYNE1-228ENST00000490135 SLURP1P55000 103 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 SOSTDC1Q6X4U4 206 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 FHL3Q13643 280 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 TMEM263Q8WUH6 116 aaKnown RBP5.58□□□□□ -1.52
SYNE1-228ENST00000490135 FAM19A4Q96LR4 140 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 SVILO95425 2214 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 WI2-2373I1.2A0A1W2PRP0 233 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 BLCAPP62952 87 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 ENHOQ6UWT2 76 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 VWCEQ96DN2 955 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 ATG2BQ96BY7 2078 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 IGLV3-1P01715 115 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 Q8N9L7 120 aa5.58□□□□□ -1.52
SYNE1-228ENST00000490135 K7ENP7 123 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 Q6JHZ5 121 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 LINC00311Q8N616 119 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 ATP5EP2Q5VTU8 51 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 LINC00322Q6ZN03 302 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-228ENST00000490135 FOXL2NBQ6ZUU3 175 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 DAND5Q8N907 189 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 A0A0J9YXV3 536 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 OXLD1Q5BKU9 147 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 LCTP09848 1927 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 PROK2Q9HC23 129 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 A0A0J9YWU9 116 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 LYRM9A8MSI8 78 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 PRR4Q16378 134 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 DEFB135Q30KP9 77 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 CEMP1Q6PRD7 247 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-228ENST00000490135 FAM167A-AS1Q96KT0 104 aa5.57□□□□□ -1.52
SYNE1-228ENST00000490135 ABCA4P78363 2273 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 RTTNQ86VV8 2226 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 ARFGEF3Q5TH69 2177 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 SPTBP11277 2137 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 IGKV1D-37A0A075B6S9 117 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 PRYO14603 147 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 GREB1Q4ZG55 1949 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 TRBV7-6A0A0J9YX20 115 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 ZNF491Q8N8L2 437 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 ZNF706Q9Y5V0 76 aaPredicted RBP5.56□□□□□ -1.52
SYNE1-228ENST00000490135 IGLV2-14P01704 120 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 CRYGDP07320 174 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 DEFB113Q30KQ7 82 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 MIR7-3HGQ8N6C7 128 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 RPL39LQ96EH5 51 aaKnown RBP5.56□□□□□ -1.52
SYNE1-228ENST00000490135 RALGAPA1Q6GYQ0 2036 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 Q8N9W7 124 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 C11orf45Q8TAV5 145 aa5.56□□□□□ -1.52
SYNE1-228ENST00000490135 IGKV1-17P01599 117 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 MSRB1Q9NZV6 116 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 DOCK3Q8IZD9 2030 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 DEFB4AO15263 64 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 CD164Q04900 197 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 LINC00336Q6ZUF6 198 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 NEXN-AS1Q8NBZ9 246 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 TNRC6BQ9UPQ9 1833 aaKnown RBP5.55□□□□□ -1.52
SYNE1-228ENST00000490135 SPINK6Q6UWN8 80 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 TPSG1Q9NRR2 321 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 MED14OSP0DP75 135 aa5.55□□□□□ -1.52
SYNE1-228ENST00000490135 DIDO1Q9BTC0 2240 aaKnown RBP5.54□□□□□ -1.52
SYNE1-228ENST00000490135 BRWD3Q6RI45 1802 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 LST1O00453 97 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 C17orf58Q2M2W7 97 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 FANCMQ8IYD8 2048 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 WT1-ASQ06250 92 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 PIK3CD-AS1Q5SR53 167 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 FLVCR1-AS1Q8TAF5 88 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 Q6ZVQ6 151 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 PRSS33Q8NF86 280 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 KIAA1549Q9HCM3 1950 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 EP300Q09472 2414 aaPredicted RBP5.54□□□□□ -1.52
SYNE1-228ENST00000490135 DOPEY2Q9Y3R5 2298 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 DOCK8Q8NF50 2099 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 ZNF524Q96C55 264 aa5.54□□□□□ -1.52
SYNE1-228ENST00000490135 INTS1Q8N201 2190 aaKnown RBP5.54□□□□□ -1.52
SYNE1-228ENST00000490135 IGHV1-58A0A0C4DH39 117 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 TRBV6-1A0A0K0K1D8 114 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 MIAQ16674 131 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 A0A087WVE0 104 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 HILS1P60008 231 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 PATE2Q6UY27 113 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 PRO0255Q9UI72 69 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 MGAMO43451 1857 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 PLAC8L1A1L4L8 177 aa5.53□□□□□ -1.52
SYNE1-228ENST00000490135 A0A0J9YXY3 114 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 IGHV4-30-4P0DP06 118 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 IGHV4-31P0DP07 118 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 SCXQ7RTU7 201 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 IGHV4-38-2P0DP08 117 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 B3GALT5-AS1P59052 145 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 FAM222AQ5U5X8 452 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 KIAA1671Q9BY89 1806 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 LINC01548A6NM66 108 aa5.52□□□□□ -1.53
SYNE1-228ENST00000490135 SPTBN1Q01082 2364 aaKnown RBP5.52□□□□□ -1.53
SYNE1-228ENST00000490135 TNS1Q9HBL0 1735 aaKnown RBP5.52□□□□□ -1.53
SYNE1-228ENST00000490135 SBSPONQ8IVN8 264 aa5.51□□□□□ -1.53
SYNE1-228ENST00000490135 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-228ENST00000490135 NCOR1O75376 2440 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms