RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 DAZ4Q86SG3 579 aaKnown RBP4.57□□□□□ -1.68
PTPRE-209ENST00000487428 ATP6V0E2Q8NHE4 81 aa4.57□□□□□ -1.68
PTPRE-209ENST00000487428 MRAP2Q96G30 205 aa4.57□□□□□ -1.68
PTPRE-209ENST00000487428 CHCHD7Q9BUK0 85 aa4.57□□□□□ -1.68
PTPRE-209ENST00000487428 NIT2Q9NQR4 276 aa4.57□□□□□ -1.68
PTPRE-209ENST00000487428 DAZ3Q9NR90 486 aaKnown RBP4.57□□□□□ -1.68
PTPRE-209ENST00000487428 S100A1P23297 94 aa4.56□□□□□ -1.68
PTPRE-209ENST00000487428 PKIAP61925 76 aa4.56□□□□□ -1.68
PTPRE-209ENST00000487428 RPL32P62910 135 aaKnown RBP4.56□□□□□ -1.68
PTPRE-209ENST00000487428 NDUFA5Q16718 116 aa4.56□□□□□ -1.68
PTPRE-209ENST00000487428 LINC01556Q5JQF7 62 aa4.56□□□□□ -1.68
PTPRE-209ENST00000487428 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.56□□□□□ -1.68
PTPRE-209ENST00000487428 NEXN-AS1Q8NBZ9 246 aa4.56□□□□□ -1.68
PTPRE-209ENST00000487428 BTF3L4Q96K17 158 aa4.56□□□□□ -1.68
PTPRE-209ENST00000487428 Q9H8V8 135 aa4.56□□□□□ -1.68
PTPRE-209ENST00000487428 RYR2Q92736 4967 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 TRBV24-1A0A075B6N3 115 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 LOC100131303A0A0U1RQF7 123 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 NBDYA0A0U1RRE5 68 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 PHOX2AO14813 284 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 SIVA1O15304 175 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 NCR2O95944 276 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 PPBPP02775 128 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 HBBP68871 147 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 LAGE3Q14657 143 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 ZNF56Q15929 161 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 COX19Q49B96 90 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 FAM104BQ5XKR9 115 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 SUMO4Q6EEV6 95 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 UBE2DNLQ8IWF7 75 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 C10orf126Q8N4M7 172 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 TPPP3Q9BW30 176 aa4.55□□□□□ -1.68
PTPRE-209ENST00000487428 TRAV9-2A0A087WT02 112 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 TRBV6-8A0A0A6YYG3 113 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 IGHV3-73A0A0B4J1V6 119 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 TRAV8-6A0A0B4J262 113 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 IGHV3-38A0A0C4DH36 116 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 MUC21A0A0G2JKD1 596 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 MUC21A0A140T8X8 626 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 PRSS47A8MTI9 375 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 SNAPINO95295 136 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 RAB4AP20338 218 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 IQCJQ1A5X6 159 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 LINC00336Q6ZUF6 198 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 SVBPQ8N300 66 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 CLRN3Q8NCR9 226 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 RNF185Q96GF1 192 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 Q9UF83 564 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 LAMTOR2Q9Y2Q5 125 aa4.54□□□□□ -1.68
PTPRE-209ENST00000487428 HYDINQ4G0P3 5121 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 TRBV27A0A0K0K1C4 114 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 A0A1B0GUV1 79 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 C7orf77A4D0Y5 90 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 GAGE12JA6NER3 117 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 F5H697 171 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 H7C423 109 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 TCAPO15273 167 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 POLR2KP53803 58 aaKnown RBP4.53□□□□□ -1.68
PTPRE-209ENST00000487428 GAGE1Q13065 139 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 GAGE4Q13068 117 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 GAGE5Q13069 117 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 GAGE13Q4V321 117 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 C20orf78Q9BR46 151 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 TNFRSF18Q9Y5U5 241 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 FRAS1Q86XX4 4008 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 RYR3Q15413 4870 aa4.53□□□□□ -1.68
PTPRE-209ENST00000487428 IBA57-AS1B1ANH7 110 aa4.52□□□□□ -1.69
PTPRE-209ENST00000487428 MGPP08493 103 aa4.52□□□□□ -1.69
PTPRE-209ENST00000487428 KCNIP4Q6PIL6 250 aa4.52□□□□□ -1.69
PTPRE-209ENST00000487428 NFE4Q86UQ8 179 aa4.52□□□□□ -1.69
PTPRE-209ENST00000487428 NIT1Q86X76 327 aa4.52□□□□□ -1.69
PTPRE-209ENST00000487428 NRACQ8N912 160 aa4.52□□□□□ -1.69
PTPRE-209ENST00000487428 TMEM70Q9BUB7 260 aa4.52□□□□□ -1.69
PTPRE-209ENST00000487428 TRBV25-1A0A075B6N4 114 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 SDHAF1A6NFY7 115 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 K7EMI3 77 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 HLA-DQA1P01909 254 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 MT-ND6P03923 174 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 S100PP25815 95 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 ELOBQ15370 118 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 MRPL51Q4U2R6 128 aaKnown RBP4.51□□□□□ -1.69
PTPRE-209ENST00000487428 ATRAIDQ6UW56 229 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 Q6ZRN7 208 aaPredicted RBP4.51□□□□□ -1.69
PTPRE-209ENST00000487428 NTM-AS1Q6ZSK4 140 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 WFDC10BQ8IUB3 73 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 AMN1Q8IY45 258 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 GNB1LQ9BYB4 327 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 KRTAP1-5Q9BYS1 174 aa4.51□□□□□ -1.69
PTPRE-209ENST00000487428 IGHV1-24A0A0C4DH33 117 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 I3L3M4 83 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 VCYO14598 125 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 APOC3P02656 99 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 ESDP10768 282 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 CAMPP49913 170 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 SUMO2P61956 95 aaKnown RBP4.5□□□□□ -1.69
PTPRE-209ENST00000487428 COTL1Q14019 142 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 OR10J3Q5JRS4 329 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 C1orf134Q5TEV5 83 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 ORMDL3Q8N138 153 aa4.5□□□□□ -1.69
PTPRE-209ENST00000487428 C6orf223Q8N319 242 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms