RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 TMEM170BQ5T4T1 132 aa13.39□□□□□ -0.27
CCM2-209ENST00000477605 AMTNQ6UX39 209 aa13.39□□□□□ -0.27
CCM2-209ENST00000477605 MUC4Q99102 2169 aa13.39□□□□□ -0.27
CCM2-209ENST00000477605 POLQO75417 2590 aa13.38□□□□□ -0.27
CCM2-209ENST00000477605 SCGB1A1P11684 91 aa13.38□□□□□ -0.27
CCM2-209ENST00000477605 ZNRF2Q8NHG8 242 aa13.38□□□□□ -0.27
CCM2-209ENST00000477605 I3L3M4 83 aa13.38□□□□□ -0.27
CCM2-209ENST00000477605 KRTAP10-9P60411 292 aa13.38□□□□□ -0.27
CCM2-209ENST00000477605 MYO9AB2RTY4 2548 aa13.38□□□□□ -0.27
CCM2-209ENST00000477605 TRAV12-2A0A075B6T6 113 aa13.37□□□□□ -0.27
CCM2-209ENST00000477605 J3QQQ9 107 aa13.37□□□□□ -0.27
CCM2-209ENST00000477605 C20orf203Q8NBC4 194 aa13.37□□□□□ -0.27
CCM2-209ENST00000477605 ATP6V0E2Q8NHE4 81 aa13.37□□□□□ -0.27
CCM2-209ENST00000477605 PDZD2O15018 2839 aa13.37□□□□□ -0.27
CCM2-209ENST00000477605 TSPAN13O95857 204 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 IGHV3-30P01768 117 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 IGHV3-30-5P0DP03 117 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 UBE2D3P61077 147 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 UBE2D2P62837 147 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 ETDBQ3ZM63 59 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 NDUFA11Q86Y39 141 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 UBE2E2Q96LR5 201 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 LEPROTO15243 131 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 LGALS3P17931 250 aaKnown RBP13.36□□□□□ -0.27
CCM2-209ENST00000477605 EMP1P54849 157 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 SPINK13Q1W4C9 94 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 SIGMAR1Q99720 223 aa13.36□□□□□ -0.27
CCM2-209ENST00000477605 TMEM238C9JI98 176 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 IGKV3-20P01619 116 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 SYNJ2BPP57105 145 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 AMELXQ99217 191 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 SPATA25Q9BR10 227 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 TMEM223A0PJW6 202 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 P0DMU3 169 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 FAM231AP0DMU4 169 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 FAM231CP0DMU5 169 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 CFAP126Q5VTH2 177 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 C10orf99Q6UWK7 81 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 SH2D6Q7Z4S9 175 aa13.35□□□□□ -0.27
CCM2-209ENST00000477605 SPAG8Q99932 426 aaPredicted RBP13.35□□□□□ -0.27
CCM2-209ENST00000477605 AGRNO00468 2067 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 TRBV20-1A0A075B6N2 111 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 GAGE12HA6NDE8 117 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 CRYBA4P53673 196 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 TSPEAR-AS2P59090 65 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 PIK3CD-AS1Q5SR53 167 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 VPREB3Q9UKI3 123 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 SPG11Q96JI7 2443 aa13.34□□□□□ -0.27
CCM2-209ENST00000477605 PYGO1Q9Y3Y4 419 aa13.33□□□□□ -0.27
CCM2-209ENST00000477605 A8MTW9 85 aa13.33□□□□□ -0.28
CCM2-209ENST00000477605 TSSC4Q9Y5U2 329 aaPredicted RBP13.33□□□□□ -0.28
CCM2-209ENST00000477605 CCDC168Q8NDH2 2452 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 A0A096LNT2 108 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 TRAV2A0A0B4J234 112 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 HOXD3P31249 432 aaPredicted RBP13.32□□□□□ -0.28
CCM2-209ENST00000477605 APOMO95445 188 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 CFC1BP0CG36 223 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 CFC1P0CG37 223 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 C10orf126Q8N4M7 172 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 VCX2Q9H322 139 aa13.32□□□□□ -0.28
CCM2-209ENST00000477605 LOC107984156A0A0G2JMH3 177 aa13.31□□□□□ -0.28
CCM2-209ENST00000477605 ARL17AQ8IVW1 177 aa13.31□□□□□ -0.28
CCM2-209ENST00000477605 PTH2Q96A98 100 aa13.31□□□□□ -0.28
CCM2-209ENST00000477605 AKAP9Q99996 3911 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 RHODO00212 210 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 Q6YL49 198 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 DEFB104AQ8WTQ1 72 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 C1QTNF4Q9BXJ3 329 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 PRO1854Q9UHT4 67 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 AKAP6Q13023 2319 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 IGLV4-3A0A075B6K6 122 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 FSHBP01225 129 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 ZNF22P17026 224 aaPredicted RBP13.3□□□□□ -0.28
CCM2-209ENST00000477605 PSMB2P49721 201 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 Q5PR19 223 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 ZNF702PQ9H963 129 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 OTOGQ6ZRI0 2925 aa13.3□□□□□ -0.28
CCM2-209ENST00000477605 ANKRD17O75179 2603 aaKnown RBP13.29□□□□□ -0.28
CCM2-209ENST00000477605 TGFAP01135 160 aa13.28□□□□□ -0.28
CCM2-209ENST00000477605 AZU1P20160 251 aa13.28□□□□□ -0.28
CCM2-209ENST00000477605 TCTEX1D4Q5JR98 221 aa13.28□□□□□ -0.28
CCM2-209ENST00000477605 A8MWV9 139 aa13.28□□□□□ -0.28
CCM2-209ENST00000477605 FOXI1Q12951 378 aa13.28□□□□□ -0.28
CCM2-209ENST00000477605 OPRPNQ99935 248 aaPredicted RBP13.28□□□□□ -0.28
CCM2-209ENST00000477605 SMCPP49901 116 aaPredicted RBP13.27□□□□□ -0.28
CCM2-209ENST00000477605 SBSPONQ8IVN8 264 aa13.27□□□□□ -0.29
CCM2-209ENST00000477605 NRGNQ92686 78 aa13.27□□□□□ -0.29
CCM2-209ENST00000477605 A0A0B4J2C4 111 aa13.26□□□□□ -0.29
CCM2-209ENST00000477605 LINC00467Q9BRT7 94 aa13.26□□□□□ -0.29
CCM2-209ENST00000477605 GTSF1LQ9H1H1 148 aa13.26□□□□□ -0.29
CCM2-209ENST00000477605 M0R2P5 195 aa13.25□□□□□ -0.29
CCM2-209ENST00000477605 MTURNQ8N3F0 131 aa13.25□□□□□ -0.29
CCM2-209ENST00000477605 DUX5Q96PT3 197 aa13.25□□□□□ -0.29
CCM2-209ENST00000477605 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.25□□□□□ -0.29
CCM2-209ENST00000477605 A0A0J9YXV3 536 aa13.25□□□□□ -0.29
CCM2-209ENST00000477605 H3BMM0 161 aa13.25□□□□□ -0.29
CCM2-209ENST00000477605 MRPS36P82909 103 aaKnown RBP13.25□□□□□ -0.29
CCM2-209ENST00000477605 TNFRSF18Q9Y5U5 241 aa13.25□□□□□ -0.29
CCM2-209ENST00000477605 RBMY1A1P0DJD3 496 aaKnown RBP13.24□□□□□ -0.29
CCM2-209ENST00000477605 RBMY1CP0DJD4 496 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms