RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SDF2Q99470 211 aa0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 WFDC6Q9BQY6 131 aa0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 SCP2D1Q9UJQ7 156 aa0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 SSPOA2VEC9 5147 aa0.03□□□□□ -2.4
CCDC88A-212ENST00000474059 CACNA1HO95180 2353 aa0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 LRRC37A3O60309 1634 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 IFT172Q9UG01 1749 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 NWD2Q9ULI1 1742 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 NDUFB6O95139 128 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 CBLN1P23435 193 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 S100A7L2Q5SY68 101 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 KCNRGQ8N5I3 272 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 SPTSSBQ8NFR3 76 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 FAM213BQ8TBF2 198 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 TCEAL4Q96EI5 215 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 BICRAQ9NZM4 1560 aa0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 TRAV1-2A0A0B4J238 106 aa0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 G3V318 75 aa0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 APOC4-APOC2K7ER74 178 aa0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 SNCGO76070 127 aa0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 ZNF818PQ6ZRF7 136 aa0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 PFDN5Q99471 154 aa0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 TMEM191AQ9H0A3 160 aa0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 OTOGQ6ZRI0 2925 aa0□□□□□ -2.41
CCDC88A-212ENST00000474059 TRBV10-3A0A0K0K1G6 114 aa0□□□□□ -2.41
CCDC88A-212ENST00000474059 GRIN2AQ12879 1464 aa0□□□□□ -2.41
CCDC88A-212ENST00000474059 ZMYM4Q5VZL5 1548 aa0□□□□□ -2.41
CCDC88A-212ENST00000474059 UBE2DNLQ8IWF7 75 aa0□□□□□ -2.41
CCDC88A-212ENST00000474059 CASKIN1Q8WXD9 1431 aa0□□□□□ -2.41
CCDC88A-212ENST00000474059 SPRR2GQ9BYE4 73 aa0□□□□□ -2.41
CCDC88A-212ENST00000474059 ANK2Q01484 3957 aa-0□□□□□ -2.41
CCDC88A-212ENST00000474059 HRNRQ86YZ3 2850 aaPredicted RBP-0□□□□□ -2.41
CCDC88A-212ENST00000474059 ZNF518AQ6AHZ1 1483 aa-0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 ABCA12Q86UK0 2595 aa-0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 SEC11CQ9BY50 192 aa-0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 LINC00312Q9Y6C7 94 aa-0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 CELSR2Q9HCU4 2923 aa-0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 PRDM2Q13029 1718 aa-0.01□□□□□ -2.41
CCDC88A-212ENST00000474059 FAM92AA1XBS5 289 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 ZNF815PA8K554 130 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 CCL8P80075 99 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 SSBP3-AS1Q7Z2R9 100 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 DPH3Q96FX2 82 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 CCDC167Q9P0B6 97 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 U3KQA8 63 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 PHLPP1O60346 1717 aa-0.02□□□□□ -2.41
CCDC88A-212ENST00000474059 IFT140Q96RY7 1462 aa-0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 POLQO75417 2590 aa-0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 ARPC4P59998 168 aa-0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 Q5VV11 94 aa-0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 PAIP2BQ9ULR5 123 aaKnown RBP-0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 KIAA0100Q14667 2235 aaKnown RBP-0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 PXDNQ92626 1479 aa-0.03□□□□□ -2.41
CCDC88A-212ENST00000474059 PIEZO1Q92508 2521 aa-0.04□□□□□ -2.42
CCDC88A-212ENST00000474059 DOCK11Q5JSL3 2073 aa-0.04□□□□□ -2.42
CCDC88A-212ENST00000474059 MYH8P13535 1937 aa-0.04□□□□□ -2.42
CCDC88A-212ENST00000474059 HIST1H1DP16402 221 aaKnown RBP-0.04□□□□□ -2.42
CCDC88A-212ENST00000474059 BAGE3Q86Y29 109 aa-0.04□□□□□ -2.42
CCDC88A-212ENST00000474059 PDCD10Q9BUL8 212 aa-0.04□□□□□ -2.42
CCDC88A-212ENST00000474059 ZFYVE26Q68DK2 2539 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 FOCADQ5VW36 1801 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 PATJQ8NI35 1801 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 SMIM6P0DI80 62 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 CFAP126Q5VTH2 177 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 ARAP2Q8WZ64 1704 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 CFTRP13569 1480 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 PTPRZ1P23471 2315 aaPredicted RBP-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 BIVM-ERCC5R4GMW8 1640 aa-0.05□□□□□ -2.42
CCDC88A-212ENST00000474059 HCG22E2RYF7 251 aa-0.06□□□□□ -2.42
CCDC88A-212ENST00000474059 SIX6O95475 246 aa-0.06□□□□□ -2.42
CCDC88A-212ENST00000474059 CCL18P55774 89 aa-0.06□□□□□ -2.42
CCDC88A-212ENST00000474059 LSM10Q969L4 123 aaKnown RBP-0.06□□□□□ -2.42
CCDC88A-212ENST00000474059 NCOR2Q9Y618 2525 aa-0.06□□□□□ -2.42
CCDC88A-212ENST00000474059 DOCK1Q14185 1865 aa-0.06□□□□□ -2.42
CCDC88A-212ENST00000474059 CADP27708 2225 aa-0.06□□□□□ -2.42
CCDC88A-212ENST00000474059 MYO7AQ13402 2215 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 MRC1P22897 1456 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 MACF1Q9UPN3 7388 aaKnown RBP-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 TRAV13-2A0A0B4J235 113 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 SPAARA0A1B0GVQ0 90 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 PIN1P1O15428 100 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 PPP1R17O96001 155 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 SPINK8P0C7L1 97 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 RBM3P98179 157 aaKnown RBP-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 CCDC58Q4VC31 144 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 Q8N8P6 123 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 AGPAT4-IT1Q9H0P7 198 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 ZNF609O15014 1411 aa-0.07□□□□□ -2.42
CCDC88A-212ENST00000474059 IGF2RP11717 2491 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 MYH9P35579 1960 aaKnown RBP-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 NDUFA2O43678 99 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 IFITM1P13164 125 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 COPS9Q8WXC6 57 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 ARL11Q969Q4 196 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 CNFNQ9BYD5 112 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 LINC00470Q9BZP3 86 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 CYP4F30PQ9H0H9 118 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 RERGLQ9H628 205 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 NPVFQ9HCQ7 196 aa-0.08□□□□□ -2.42
CCDC88A-212ENST00000474059 SCN3BQ9NY72 215 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms