RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 NAT8Q9UHE5 227 aa10.25□□□□□ -0.77
LIMS1-212ENST00000474038 LRP1BQ9NZR2 4599 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 A0A087WWC5 75 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 K7EP13 123 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 FOXA3P55318 350 aaPredicted RBP10.24□□□□□ -0.77
LIMS1-212ENST00000474038 ADIRFQ15847 76 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 LINC01556Q5JQF7 62 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 PGLYRP4Q96LB8 373 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 DPH3P1Q9H4G8 78 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 TNFRSF18Q9Y5U5 241 aa10.24□□□□□ -0.77
LIMS1-212ENST00000474038 M0QY20 66 aa10.23□□□□□ -0.77
LIMS1-212ENST00000474038 CLLU1Q5K131 121 aa10.23□□□□□ -0.77
LIMS1-212ENST00000474038 SUMO4Q6EEV6 95 aa10.23□□□□□ -0.77
LIMS1-212ENST00000474038 C15orf54Q8N8G6 183 aa10.23□□□□□ -0.77
LIMS1-212ENST00000474038 TSKUQ8WUA8 353 aa10.23□□□□□ -0.77
LIMS1-212ENST00000474038 V9GYV3 84 aa10.23□□□□□ -0.77
LIMS1-212ENST00000474038 GFRA4Q9GZZ7 299 aa10.22□□□□□ -0.77
LIMS1-212ENST00000474038 RYR1P21817 5038 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 FAM231BA6NCW3 169 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 HIGD1CA8MV81 97 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 C16orf90A8MZG2 172 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 H7C1H1 209 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 IGHV3-30P01768 117 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 IGHV3-33P01772 117 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 IGHV3-30-3P0DP02 117 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 IGHV3-30-5P0DP03 117 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 Q6ZRN7 208 aaPredicted RBP10.21□□□□□ -0.77
LIMS1-212ENST00000474038 Q8N3U1 123 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 C10orf126Q8N4M7 172 aa10.21□□□□□ -0.77
LIMS1-212ENST00000474038 HSPG2P98160 4391 aa10.2□□□□□ -0.78
LIMS1-212ENST00000474038 A0A1B0GUT8 65 aa10.19□□□□□ -0.78
LIMS1-212ENST00000474038 RASL11AQ6T310 242 aa10.19□□□□□ -0.78
LIMS1-212ENST00000474038 NFE4Q86UQ8 179 aa10.19□□□□□ -0.78
LIMS1-212ENST00000474038 BORCS7Q96B45 105 aa10.19□□□□□ -0.78
LIMS1-212ENST00000474038 DNAJC30Q96LL9 226 aa10.19□□□□□ -0.78
LIMS1-212ENST00000474038 TRBV6-8A0A0A6YYG3 113 aa10.18□□□□□ -0.78
LIMS1-212ENST00000474038 IBA57-AS1B1ANH7 110 aa10.18□□□□□ -0.78
LIMS1-212ENST00000474038 SMIM15Q7Z3B0 74 aa10.18□□□□□ -0.78
LIMS1-212ENST00000474038 DAZ4Q86SG3 579 aaKnown RBP10.18□□□□□ -0.78
LIMS1-212ENST00000474038 NIT1Q86X76 327 aa10.18□□□□□ -0.78
LIMS1-212ENST00000474038 NUP35Q8NFH5 326 aa10.18□□□□□ -0.78
LIMS1-212ENST00000474038 DAZ3Q9NR90 486 aaKnown RBP10.18□□□□□ -0.78
LIMS1-212ENST00000474038 DNAH5Q8TE73 4624 aa10.17□□□□□ -0.78
LIMS1-212ENST00000474038 NTM-AS1Q6ZSK4 140 aa10.17□□□□□ -0.78
LIMS1-212ENST00000474038 SPATA12Q7Z6I5 190 aa10.17□□□□□ -0.78
LIMS1-212ENST00000474038 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.17□□□□□ -0.78
LIMS1-212ENST00000474038 GATD1Q8NB37 220 aa10.17□□□□□ -0.78
LIMS1-212ENST00000474038 NIT2Q9NQR4 276 aa10.17□□□□□ -0.78
LIMS1-212ENST00000474038 TRAV26-2A0A0B4J265 109 aa10.16□□□□□ -0.78
LIMS1-212ENST00000474038 SMIM27A0A1W2PRY6 76 aa10.16□□□□□ -0.78
LIMS1-212ENST00000474038 NAT8BQ9UHF3 227 aa10.16□□□□□ -0.78
LIMS1-212ENST00000474038 PCLOQ9Y6V0 5065 aa10.16□□□□□ -0.78
LIMS1-212ENST00000474038 KRTAP10-2P60368 255 aa10.15□□□□□ -0.78
LIMS1-212ENST00000474038 TMEM97Q5BJF2 176 aa10.15□□□□□ -0.78
LIMS1-212ENST00000474038 TMEM191AQ9H0A3 160 aa10.15□□□□□ -0.78
LIMS1-212ENST00000474038 URGCP-MRPS24S4R325 110 aa10.15□□□□□ -0.78
LIMS1-212ENST00000474038 APOBP04114 4563 aaKnown RBP10.15□□□□□ -0.78
LIMS1-212ENST00000474038 RIGQ13278 110 aa10.14□□□□□ -0.79
LIMS1-212ENST00000474038 LAGE3Q14657 143 aa10.14□□□□□ -0.79
LIMS1-212ENST00000474038 FRZBQ92765 325 aa10.14□□□□□ -0.79
LIMS1-212ENST00000474038 Q9HAA7 133 aa10.14□□□□□ -0.79
LIMS1-212ENST00000474038 A0A087WX48 190 aa10.13□□□□□ -0.79
LIMS1-212ENST00000474038 RPL39LQ96EH5 51 aaKnown RBP10.13□□□□□ -0.79
LIMS1-212ENST00000474038 CHCHD7Q9BUK0 85 aa10.13□□□□□ -0.79
LIMS1-212ENST00000474038 TRBV25-1A0A075B6N4 114 aa10.12□□□□□ -0.79
LIMS1-212ENST00000474038 TMEM262E9PQX1 116 aa10.12□□□□□ -0.79
LIMS1-212ENST00000474038 PNRC1Q12796 327 aaPredicted RBP10.12□□□□□ -0.79
LIMS1-212ENST00000474038 RNF185Q96GF1 192 aa10.12□□□□□ -0.79
LIMS1-212ENST00000474038 CHCHD5Q9BSY4 110 aa10.12□□□□□ -0.79
LIMS1-212ENST00000474038 IGHV1-24A0A0C4DH33 117 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 GAS8-AS1O95177 125 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 RAB4AP20338 218 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 IQCJQ1A5X6 159 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 MPV17L2Q567V2 206 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 KCNIP4Q6PIL6 250 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 UQCC3Q6UW78 93 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 AMN1Q8IY45 258 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 DEFB104AQ8WTQ1 72 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 KRTAP4-5Q9BYR2 181 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 KLK12Q9UKR0 248 aa10.11□□□□□ -0.79
LIMS1-212ENST00000474038 PPP1R2P9O14990 202 aa10.1□□□□□ -0.79
LIMS1-212ENST00000474038 A0A087WTM6 91 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 TRAV8-3A0A0A6YYJ7 113 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 TRBV6-5A0A0K0K1A5 114 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 TMEM218A2RU14 115 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 PSCAO43653 123 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 CDK2AP2O75956 126 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 ADCYAP1P18509 176 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 FUSP35637 526 aaKnown RBP eCLIP10.09□□□□□ -0.79
LIMS1-212ENST00000474038 CAMPP49913 170 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 PKIAP61925 76 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 GAGE6Q13070 117 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 ELOBQ15370 118 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 ATRAIDQ6UW56 229 aa10.09□□□□□ -0.79
LIMS1-212ENST00000474038 ABCA13Q86UQ4 5058 aa10.08□□□□□ -0.8
LIMS1-212ENST00000474038 A0A1B0GW15 77 aa10.08□□□□□ -0.8
LIMS1-212ENST00000474038 SDHAF1A6NFY7 115 aa10.08□□□□□ -0.8
LIMS1-212ENST00000474038 MT-ND4LP03901 98 aa10.08□□□□□ -0.8
LIMS1-212ENST00000474038 COTL1Q14019 142 aa10.08□□□□□ -0.8
LIMS1-212ENST00000474038 COMMD7Q86VX2 200 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms