RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 TMEM238C9JI98 176 aa-1.79□□□□□ -2.7
PRPF40A-207ENST00000471701 M0R2P5 195 aa-1.79□□□□□ -2.7
PRPF40A-207ENST00000471701 PFDN1O60925 122 aa-1.79□□□□□ -2.7
PRPF40A-207ENST00000471701 KIAA0100Q14667 2235 aaKnown RBP-1.8□□□□□ -2.7
PRPF40A-207ENST00000471701 FXYD6-FXYD2A0A087WZ82 144 aa-1.8□□□□□ -2.7
PRPF40A-207ENST00000471701 TRIQKQ629K1 86 aa-1.8□□□□□ -2.7
PRPF40A-207ENST00000471701 SCN3BQ9NY72 215 aa-1.8□□□□□ -2.7
PRPF40A-207ENST00000471701 PLXNB2O15031 1838 aa-1.8□□□□□ -2.7
PRPF40A-207ENST00000471701 WNK3Q9BYP7 1800 aa-1.8□□□□□ -2.7
PRPF40A-207ENST00000471701 SETD2Q9BYW2 2564 aaPredicted RBP-1.81□□□□□ -2.7
PRPF40A-207ENST00000471701 ZNF609O15014 1411 aa-1.81□□□□□ -2.7
PRPF40A-207ENST00000471701 KDM3BQ7LBC6 1761 aa-1.81□□□□□ -2.7
PRPF40A-207ENST00000471701 CLPSL1A2RUU4 121 aa-1.82□□□□□ -2.7
PRPF40A-207ENST00000471701 CCDC179H3BU77 68 aa-1.82□□□□□ -2.7
PRPF40A-207ENST00000471701 J3QLW9 94 aa-1.82□□□□□ -2.7
PRPF40A-207ENST00000471701 MT-ND4LP03901 98 aa-1.82□□□□□ -2.7
PRPF40A-207ENST00000471701 BANF2Q9H503 90 aa-1.82□□□□□ -2.7
PRPF40A-207ENST00000471701 LRP6O75581 1613 aa-1.82□□□□□ -2.7
PRPF40A-207ENST00000471701 OVOS2A0A0G2JMS6 1433 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 ROCK1Q13464 1354 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 MXRA5Q9NR99 2828 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 BORCS7-ASMTA0A0B4J1R7 106 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 CLLU1Q5K131 121 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 CFAP126Q5VTH2 177 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 Q5VV11 94 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 TSC2P49815 1807 aa-1.83□□□□□ -2.7
PRPF40A-207ENST00000471701 NPFFO15130 113 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 RBP4P02753 201 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 HLA-DRB4P13762 266 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 G0S2P27469 103 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 RBM3P98179 157 aaKnown RBP-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 SPAG11AQ6PDA7 123 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 ATP11AUNQ6ZP68 121 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 PCBD2Q9H0N5 130 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 TP53AIP1Q9HCN2 124 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 NPVFQ9HCQ7 196 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 CALML5Q9NZT1 146 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 HLA-DRB4X5D2U9 266 aa-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 XIRP1Q702N8 1843 aaKnown RBP-1.84□□□□□ -2.7
PRPF40A-207ENST00000471701 I3L2K1 104 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 PAEPP09466 180 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 KRTAP6-2Q3LI66 62 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 MNS1Q8NEH6 495 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 OR9Q1Q8NGQ5 310 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 C10orf82Q8WW14 230 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 NDUFA12Q9UI09 145 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 ATPIF1Q9UII2 106 aa-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 LSM2Q9Y333 95 aaKnown RBP-1.85□□□□□ -2.71
PRPF40A-207ENST00000471701 STARD9Q9P2P6 4700 aa-1.86□□□□□ -2.71
PRPF40A-207ENST00000471701 ERCC6Q03468 1493 aa-1.86□□□□□ -2.71
PRPF40A-207ENST00000471701 APOC4-APOC2K7ER74 178 aa-1.86□□□□□ -2.71
PRPF40A-207ENST00000471701 DPM2O94777 84 aa-1.86□□□□□ -2.71
PRPF40A-207ENST00000471701 LINC01545Q5VT33 79 aa-1.86□□□□□ -2.71
PRPF40A-207ENST00000471701 USH2AO75445 5202 aa-1.86□□□□□ -2.71
PRPF40A-207ENST00000471701 MT4P47944 62 aa-1.87□□□□□ -2.71
PRPF40A-207ENST00000471701 UBE2D1P51668 147 aa-1.87□□□□□ -2.71
PRPF40A-207ENST00000471701 DCDP81605 110 aaKnown RBP-1.87□□□□□ -2.71
PRPF40A-207ENST00000471701 ERCC6L2Q5T890 1561 aa-1.87□□□□□ -2.71
PRPF40A-207ENST00000471701 FAM92AA1XBS5 289 aa-1.88□□□□□ -2.71
PRPF40A-207ENST00000471701 SMIM24O75264 130 aa-1.88□□□□□ -2.71
PRPF40A-207ENST00000471701 TMEM244Q5VVB8 128 aa-1.88□□□□□ -2.71
PRPF40A-207ENST00000471701 J3KT08 172 aa-1.89□□□□□ -2.71
PRPF40A-207ENST00000471701 SAMD13Q5VXD3 122 aa-1.89□□□□□ -2.71
PRPF40A-207ENST00000471701 BAGE3Q86Y29 109 aa-1.89□□□□□ -2.71
PRPF40A-207ENST00000471701 OR8I2Q8N0Y5 310 aa-1.89□□□□□ -2.71
PRPF40A-207ENST00000471701 TMEM35BQ8NCS4 154 aa-1.89□□□□□ -2.71
PRPF40A-207ENST00000471701 YPEL1O60688 119 aa-1.9□□□□□ -2.71
PRPF40A-207ENST00000471701 SPRR1BP22528 89 aa-1.9□□□□□ -2.71
PRPF40A-207ENST00000471701 SPRR2AP35326 72 aa-1.9□□□□□ -2.71
PRPF40A-207ENST00000471701 GNG10P50151 68 aa-1.9□□□□□ -2.71
PRPF40A-207ENST00000471701 TMEM128Q5BJH2 165 aa-1.9□□□□□ -2.71
PRPF40A-207ENST00000471701 NBPF19A0A087WUL8 3843 aa-1.9□□□□□ -2.71
PRPF40A-207ENST00000471701 PAPPAQ13219 1627 aa-1.91□□□□□ -2.71
PRPF40A-207ENST00000471701 DNAH6Q9C0G6 4158 aa-1.91□□□□□ -2.71
PRPF40A-207ENST00000471701 TRBV6-1A0A0K0K1D8 114 aa-1.91□□□□□ -2.72
PRPF40A-207ENST00000471701 TOMM20LQ6UXN7 152 aa-1.91□□□□□ -2.72
PRPF40A-207ENST00000471701 M0R2T5 61 aa-1.92□□□□□ -2.72
PRPF40A-207ENST00000471701 E2F6O75461 281 aa-1.92□□□□□ -2.72
PRPF40A-207ENST00000471701 SMIM6P0DI80 62 aa-1.93□□□□□ -2.72
PRPF40A-207ENST00000471701 C9orf116Q5BN46 136 aaPredicted RBP-1.93□□□□□ -2.72
PRPF40A-207ENST00000471701 RPRMQ9NS64 109 aa-1.93□□□□□ -2.72
PRPF40A-207ENST00000471701 SYNJ1O43426 1573 aa-1.93□□□□□ -2.72
PRPF40A-207ENST00000471701 LRRC37A3O60309 1634 aa-1.94□□□□□ -2.72
PRPF40A-207ENST00000471701 E5RI56 91 aa-1.94□□□□□ -2.72
PRPF40A-207ENST00000471701 CDC26Q8NHZ8 85 aa-1.94□□□□□ -2.72
PRPF40A-207ENST00000471701 AGPAT4-IT1Q9H0P7 198 aa-1.94□□□□□ -2.72
PRPF40A-207ENST00000471701 PIRTP0C851 137 aa-1.95□□□□□ -2.72
PRPF40A-207ENST00000471701 SPANXN1Q5VSR9 72 aa-1.95□□□□□ -2.72
PRPF40A-207ENST00000471701 URB1O60287 2271 aaKnown RBP-1.95□□□□□ -2.72
PRPF40A-207ENST00000471701 IQSEC2Q5JU85 1478 aa-1.95□□□□□ -2.72
PRPF40A-207ENST00000471701 WDR7Q9Y4E6 1490 aa-1.95□□□□□ -2.72
PRPF40A-207ENST00000471701 PRDM2Q13029 1718 aa-1.96□□□□□ -2.72
PRPF40A-207ENST00000471701 S100A3P33764 101 aa-1.96□□□□□ -2.72
PRPF40A-207ENST00000471701 MIC13Q5XKP0 118 aa-1.96□□□□□ -2.72
PRPF40A-207ENST00000471701 VSTM2AQ8TAG5 236 aa-1.96□□□□□ -2.72
PRPF40A-207ENST00000471701 FXYD6Q9H0Q3 95 aa-1.96□□□□□ -2.72
PRPF40A-207ENST00000471701 PCNX1Q96RV3 2341 aa-1.96□□□□□ -2.72
PRPF40A-207ENST00000471701 UBR4Q5T4S7 5183 aa-1.97□□□□□ -2.72
PRPF40A-207ENST00000471701 TRAV36DV7A0A075B6V5 113 aa-1.97□□□□□ -2.72
PRPF40A-207ENST00000471701 TNFSF15O95150 251 aa-1.97□□□□□ -2.72
Retrieved 100 of 20,778 RNA–protein pairs in 178.9 ms