RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ESRGQ1W209 222 aa10.21□□□□□ -0.77
COL9A3-209ENST00000469852 ATP5L2Q7Z4Y8 100 aa10.21□□□□□ -0.77
COL9A3-209ENST00000469852 BTF3L4Q96K17 158 aa10.21□□□□□ -0.77
COL9A3-209ENST00000469852 A0A1B0GW15 77 aa10.2□□□□□ -0.78
COL9A3-209ENST00000469852 SMKR1H3BMG3 65 aa10.2□□□□□ -0.78
COL9A3-209ENST00000469852 KCNIP4Q6PIL6 250 aa10.2□□□□□ -0.78
COL9A3-209ENST00000469852 ZNRF2Q8NHG8 242 aa10.2□□□□□ -0.78
COL9A3-209ENST00000469852 LINC00476Q8WZB0 136 aa10.2□□□□□ -0.78
COL9A3-209ENST00000469852 RPL39LQ96EH5 51 aaKnown RBP10.2□□□□□ -0.78
COL9A3-209ENST00000469852 LINC00588Q9Y4M8 146 aa10.2□□□□□ -0.78
COL9A3-209ENST00000469852 KMT2AQ03164 3969 aa10.19□□□□□ -0.78
COL9A3-209ENST00000469852 TRBV10-1A0A0K0K1A3 114 aa10.19□□□□□ -0.78
COL9A3-209ENST00000469852 FAM104BQ5XKR9 115 aa10.19□□□□□ -0.78
COL9A3-209ENST00000469852 RASL11AQ6T310 242 aa10.19□□□□□ -0.78
COL9A3-209ENST00000469852 LYPD5Q6UWN5 251 aa10.19□□□□□ -0.78
COL9A3-209ENST00000469852 NEGR1Q7Z3B1 354 aa10.19□□□□□ -0.78
COL9A3-209ENST00000469852 DNAH6Q9C0G6 4158 aa10.19□□□□□ -0.78
COL9A3-209ENST00000469852 NCR2O95944 276 aa10.18□□□□□ -0.78
COL9A3-209ENST00000469852 S100PP25815 95 aa10.18□□□□□ -0.78
COL9A3-209ENST00000469852 RPS10P46783 165 aaKnown RBP10.18□□□□□ -0.78
COL9A3-209ENST00000469852 UBE2D3P61077 147 aa10.18□□□□□ -0.78
COL9A3-209ENST00000469852 UBE2D2P62837 147 aa10.18□□□□□ -0.78
COL9A3-209ENST00000469852 MRPL51Q4U2R6 128 aaKnown RBP10.18□□□□□ -0.78
COL9A3-209ENST00000469852 LGALS9CQ6DKI2 356 aa10.18□□□□□ -0.78
COL9A3-209ENST00000469852 CBLN2Q8IUK8 224 aa10.18□□□□□ -0.78
COL9A3-209ENST00000469852 ATP6V0E2Q8NHE4 81 aa10.18□□□□□ -0.78
COL9A3-209ENST00000469852 TRBV7-3A0A075B6L6 115 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 TRAV9-1A0A075B6T8 112 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 TGIF2-C20orf24A0A0A6YYL0 155 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 IGHV3-38A0A0C4DH36 116 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 LY6G6CO95867 125 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 RPL36AP83881 106 aaKnown RBP10.17□□□□□ -0.78
COL9A3-209ENST00000469852 ELOBQ15370 118 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 TMEM136Q6ZRR5 245 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 RPL36ALQ969Q0 106 aaKnown RBP10.17□□□□□ -0.78
COL9A3-209ENST00000469852 YPEL4Q96NS1 127 aa10.17□□□□□ -0.78
COL9A3-209ENST00000469852 H7C1H1 209 aa10.16□□□□□ -0.78
COL9A3-209ENST00000469852 S100A8P05109 93 aa10.16□□□□□ -0.78
COL9A3-209ENST00000469852 NIT2Q9NQR4 276 aa10.16□□□□□ -0.78
COL9A3-209ENST00000469852 CCL18P55774 89 aa10.15□□□□□ -0.78
COL9A3-209ENST00000469852 UBE2DNLQ8IWF7 75 aa10.15□□□□□ -0.78
COL9A3-209ENST00000469852 NRACQ8N912 160 aa10.15□□□□□ -0.78
COL9A3-209ENST00000469852 DEFB104AQ8WTQ1 72 aa10.15□□□□□ -0.78
COL9A3-209ENST00000469852 MRAP2Q96G30 205 aa10.15□□□□□ -0.78
COL9A3-209ENST00000469852 OR10J3Q5JRS4 329 aa10.14□□□□□ -0.79
COL9A3-209ENST00000469852 SH2D6Q7Z4S9 175 aa10.14□□□□□ -0.79
COL9A3-209ENST00000469852 DNAJC30Q96LL9 226 aa10.14□□□□□ -0.79
COL9A3-209ENST00000469852 GTSF1LQ9H1H1 148 aa10.14□□□□□ -0.79
COL9A3-209ENST00000469852 MRPS16Q9Y3D3 137 aaKnown RBP10.14□□□□□ -0.79
COL9A3-209ENST00000469852 TNFRSF18Q9Y5U5 241 aa10.14□□□□□ -0.79
COL9A3-209ENST00000469852 D6R8Y8 96 aa10.13□□□□□ -0.79
COL9A3-209ENST00000469852 SCO1O75880 301 aa10.13□□□□□ -0.79
COL9A3-209ENST00000469852 FRZBQ92765 325 aa10.13□□□□□ -0.79
COL9A3-209ENST00000469852 TRBV24-1A0A075B6N3 115 aa10.12□□□□□ -0.79
COL9A3-209ENST00000469852 TRBV6-5A0A0K0K1A5 114 aa10.12□□□□□ -0.79
COL9A3-209ENST00000469852 ATP6V1G1O75348 118 aa10.12□□□□□ -0.79
COL9A3-209ENST00000469852 CKS2P33552 79 aa10.12□□□□□ -0.79
COL9A3-209ENST00000469852 TIRAPP58753 221 aa10.12□□□□□ -0.79
COL9A3-209ENST00000469852 NTM-AS1Q6ZSK4 140 aa10.12□□□□□ -0.79
COL9A3-209ENST00000469852 WFDC10BQ8IUB3 73 aa10.12□□□□□ -0.79
COL9A3-209ENST00000469852 SDHAF1A6NFY7 115 aa10.11□□□□□ -0.79
COL9A3-209ENST00000469852 NPYP01303 97 aa10.11□□□□□ -0.79
COL9A3-209ENST00000469852 UPK3BQ9BT76 320 aa10.11□□□□□ -0.79
COL9A3-209ENST00000469852 GNB1LQ9BYB4 327 aa10.11□□□□□ -0.79
COL9A3-209ENST00000469852 SMCO4Q9NRQ5 59 aa10.11□□□□□ -0.79
COL9A3-209ENST00000469852 KIAA1644Q3SXP7 199 aa10.1□□□□□ -0.79
COL9A3-209ENST00000469852 LELP1Q5T871 98 aa10.1□□□□□ -0.79
COL9A3-209ENST00000469852 DAZ4Q86SG3 579 aaKnown RBP10.1□□□□□ -0.79
COL9A3-209ENST00000469852 ST20Q9HBF5 79 aa10.1□□□□□ -0.79
COL9A3-209ENST00000469852 DAZ3Q9NR90 486 aaKnown RBP10.1□□□□□ -0.79
COL9A3-209ENST00000469852 IGLV2-18A0A075B6J9 118 aa10.09□□□□□ -0.79
COL9A3-209ENST00000469852 TNFRSF6BO95407 300 aa10.09□□□□□ -0.79
COL9A3-209ENST00000469852 HLA-DQA1P01909 254 aa10.09□□□□□ -0.79
COL9A3-209ENST00000469852 POLR2KP53803 58 aaKnown RBP10.09□□□□□ -0.79
COL9A3-209ENST00000469852 Q8N3U1 123 aa10.09□□□□□ -0.79
COL9A3-209ENST00000469852 TMEM70Q9BUB7 260 aa10.09□□□□□ -0.79
COL9A3-209ENST00000469852 DNAH2Q9P225 4427 aa10.09□□□□□ -0.79
COL9A3-209ENST00000469852 TRBV6-8A0A0A6YYG3 113 aa10.08□□□□□ -0.8
COL9A3-209ENST00000469852 APCSP02743 223 aa10.08□□□□□ -0.8
COL9A3-209ENST00000469852 ORMDL3Q8N138 153 aa10.08□□□□□ -0.8
COL9A3-209ENST00000469852 PRELID3AQ96N28 172 aa10.08□□□□□ -0.8
COL9A3-209ENST00000469852 MRPL18Q9H0U6 180 aaKnown RBP10.08□□□□□ -0.8
COL9A3-209ENST00000469852 Q9H8V8 135 aa10.08□□□□□ -0.8
COL9A3-209ENST00000469852 PPBPP02775 128 aa10.07□□□□□ -0.8
COL9A3-209ENST00000469852 SUMO2P61956 95 aaKnown RBP10.07□□□□□ -0.8
COL9A3-209ENST00000469852 KRTAP1-5Q9BYS1 174 aa10.07□□□□□ -0.8
COL9A3-209ENST00000469852 TRBV27A0A0K0K1C4 114 aa10.06□□□□□ -0.8
COL9A3-209ENST00000469852 SIVA1O15304 175 aa10.06□□□□□ -0.8
COL9A3-209ENST00000469852 TSHBP01222 138 aa10.06□□□□□ -0.8
COL9A3-209ENST00000469852 MT-ND6P03923 174 aa10.06□□□□□ -0.8
COL9A3-209ENST00000469852 COX19Q49B96 90 aa10.06□□□□□ -0.8
COL9A3-209ENST00000469852 TRAV8-6A0A0B4J262 113 aa10.05□□□□□ -0.8
COL9A3-209ENST00000469852 I3L3M4 83 aa10.05□□□□□ -0.8
COL9A3-209ENST00000469852 M0R2N4 97 aa10.05□□□□□ -0.8
COL9A3-209ENST00000469852 PPP1R17O96001 155 aa10.05□□□□□ -0.8
COL9A3-209ENST00000469852 FABP9Q0Z7S8 132 aa10.05□□□□□ -0.8
COL9A3-209ENST00000469852 COTL1Q14019 142 aa10.05□□□□□ -0.8
COL9A3-209ENST00000469852 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.05□□□□□ -0.8
COL9A3-209ENST00000469852 C20orf78Q9BR46 151 aa10.05□□□□□ -0.8
COL9A3-209ENST00000469852 TRAPPC1Q9Y5R8 145 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms