RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 LINC00528Q8N1L1 170 aa10.85□□□□□ -0.67
CCDC28B-204ENST00000469003 C11orf52Q96A22 123 aa10.85□□□□□ -0.67
CCDC28B-204ENST00000469003 C1orf43Q9BWL3 253 aa10.85□□□□□ -0.67
CCDC28B-204ENST00000469003 UBR4Q5T4S7 5183 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 CRPP02741 224 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 MPV17L2Q567V2 206 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 TMEM97Q5BJF2 176 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 ENHOQ6UWT2 76 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 C15orf54Q8N8G6 183 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 AP1S3Q96PC3 154 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 KIF25-AS1Q9Y6Z4 181 aa10.84□□□□□ -0.67
CCDC28B-204ENST00000469003 TRAV1-1A0A0B4J248 108 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 SMIM17P0DL12 118 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 SSTP61278 116 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 CCL20P78556 96 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 C14orf177Q52M58 125 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 SCXQ7RTU7 201 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 CHCHD5Q9BSY4 110 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 DERL1Q9BUN8 251 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 GNG13Q9P2W3 67 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 VAX2Q9UIW0 290 aa10.83□□□□□ -0.68
CCDC28B-204ENST00000469003 ANGP03950 147 aaKnown RBP10.82□□□□□ -0.68
CCDC28B-204ENST00000469003 RAB5CP51148 216 aa10.82□□□□□ -0.68
CCDC28B-204ENST00000469003 NTM-AS1Q6ZSK4 140 aa10.82□□□□□ -0.68
CCDC28B-204ENST00000469003 CENPWQ5EE01 88 aa10.81□□□□□ -0.68
CCDC28B-204ENST00000469003 CHAC1Q9BUX1 264 aa10.81□□□□□ -0.68
CCDC28B-204ENST00000469003 TEX46H3BTG2 121 aa10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 IGLV2-8P01709 118 aa10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 IGLC6P0CF74 106 aa10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 RPS20P60866 119 aaKnown RBP10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 MIAQ16674 131 aa10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 EIF5AL1Q6IS14 154 aaKnown RBP10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 FER1L6-AS1Q8NA97 138 aa10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 DAZAP1Q96EP5 407 aaKnown RBP10.8□□□□□ -0.68
CCDC28B-204ENST00000469003 C19orf71A6NCJ1 209 aa10.79□□□□□ -0.68
CCDC28B-204ENST00000469003 GZMBP10144 247 aa10.79□□□□□ -0.68
CCDC28B-204ENST00000469003 OR2D3Q8NGH3 330 aa10.79□□□□□ -0.68
CCDC28B-204ENST00000469003 SMIM12Q96EX1 92 aa10.79□□□□□ -0.68
CCDC28B-204ENST00000469003 TRBV25-1A0A075B6N4 114 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 MGPP08493 103 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 SULT1A2P50226 295 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 RBX1P62877 108 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 CACNG7P62955 275 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 GAGE6Q13070 117 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 DEFB104AQ8WTQ1 72 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 TPPP3Q9BW30 176 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 PRR34Q9NV39 138 aa10.78□□□□□ -0.68
CCDC28B-204ENST00000469003 RAB19A4D1S5 217 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 USP17L23D6RBM5 183 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 H7C1H1 209 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 M0QY20 66 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 HLA-DQA1P01909 254 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 GNG4P50150 75 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 MEF2BQ02080 365 aaPredicted RBP10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 IQCJQ1A5X6 159 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 CIRBP-AS1Q8TBR5 109 aa10.77□□□□□ -0.69
CCDC28B-204ENST00000469003 IGHV1-24A0A0C4DH33 117 aa10.76□□□□□ -0.69
CCDC28B-204ENST00000469003 XKRY2A2RUG3 117 aa10.76□□□□□ -0.69
CCDC28B-204ENST00000469003 PDE6DO43924 150 aa10.76□□□□□ -0.69
CCDC28B-204ENST00000469003 SUMO4Q6EEV6 95 aa10.76□□□□□ -0.69
CCDC28B-204ENST00000469003 F2Z2F3 143 aa10.75□□□□□ -0.69
CCDC28B-204ENST00000469003 IFNA1P01562 189 aa10.75□□□□□ -0.69
CCDC28B-204ENST00000469003 P01737 135 aa10.75□□□□□ -0.69
CCDC28B-204ENST00000469003 CLPSL2Q6UWE3 100 aa10.75□□□□□ -0.69
CCDC28B-204ENST00000469003 LINC00269Q8N2A0 174 aa10.75□□□□□ -0.69
CCDC28B-204ENST00000469003 BIN3Q9NQY0 253 aa10.75□□□□□ -0.69
CCDC28B-204ENST00000469003 TRBV20OR9-2A0A075B6H5 130 aa10.74□□□□□ -0.69
CCDC28B-204ENST00000469003 KRTAP29-1A8MX34 341 aaPredicted RBP10.74□□□□□ -0.69
CCDC28B-204ENST00000469003 PRSS1P07477 247 aa10.74□□□□□ -0.69
CCDC28B-204ENST00000469003 TRGC1P0CF51 173 aa10.74□□□□□ -0.69
CCDC28B-204ENST00000469003 KRTAP26-1Q6PEX3 210 aa10.74□□□□□ -0.69
CCDC28B-204ENST00000469003 MED9Q9NWA0 146 aa10.74□□□□□ -0.69
CCDC28B-204ENST00000469003 BCL2P10415 239 aa10.73□□□□□ -0.69
CCDC28B-204ENST00000469003 NKX2-5P52952 324 aaPredicted RBP10.73□□□□□ -0.69
CCDC28B-204ENST00000469003 KRTAP10-4P60372 401 aaPredicted RBP10.73□□□□□ -0.69
CCDC28B-204ENST00000469003 DGAT2L7PQ6IED9 249 aa10.73□□□□□ -0.69
CCDC28B-204ENST00000469003 RASL11AQ6T310 242 aa10.73□□□□□ -0.69
CCDC28B-204ENST00000469003 LYZL1Q6UWQ5 148 aa10.73□□□□□ -0.69
CCDC28B-204ENST00000469003 TCTE3Q8IZS6 198 aa10.72□□□□□ -0.69
CCDC28B-204ENST00000469003 DPH3P1Q9H4G8 78 aa10.72□□□□□ -0.69
CCDC28B-204ENST00000469003 NTF3P20783 257 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 REG3AQ06141 175 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 WDR73Q6P4I2 378 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 SLC51BQ86UW2 128 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 C9orf62Q8N4C0 152 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 C9orf163Q8N9P6 203 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 C20orf203Q8NBC4 194 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 PGLYRP4Q96LB8 373 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 TMEM243Q9BU79 118 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 NIT2Q9NQR4 276 aa10.71□□□□□ -0.69
CCDC28B-204ENST00000469003 A0A1B0GUV1 79 aa10.7□□□□□ -0.7
CCDC28B-204ENST00000469003 TAGLN2P37802 199 aaKnown RBP10.7□□□□□ -0.7
CCDC28B-204ENST00000469003 CTRLP40313 264 aa10.7□□□□□ -0.7
CCDC28B-204ENST00000469003 NUDT10Q8NFP7 164 aa10.7□□□□□ -0.7
CCDC28B-204ENST00000469003 NUDT11Q96G61 164 aa10.7□□□□□ -0.7
CCDC28B-204ENST00000469003 TRAV8-4A0A0B4J246 113 aa10.69□□□□□ -0.7
CCDC28B-204ENST00000469003 SERTAD4-AS1Q5TG53 156 aa10.69□□□□□ -0.7
CCDC28B-204ENST00000469003 CLRN3Q8NCR9 226 aa10.69□□□□□ -0.7
CCDC28B-204ENST00000469003 IGLV4-60A0A075B6I1 120 aa10.68□□□□□ -0.7
CCDC28B-204ENST00000469003 IGLV10-54A0A075B6I4 117 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms