RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 LGALS9O00182 355 aa6.65□□□□□ -1.34
HPS4-209ENST00000466781 KIR2DL5BA0A0G2JN68 375 aa6.65□□□□□ -1.35
HPS4-209ENST00000466781 KIR2DL5BA0A0G2JPC4 375 aa6.65□□□□□ -1.35
HPS4-209ENST00000466781 KIR2DL5AQ8N109 375 aa6.65□□□□□ -1.35
HPS4-209ENST00000466781 TRBV6-1A0A0K0K1D8 114 aa6.65□□□□□ -1.35
HPS4-209ENST00000466781 LYRM9A8MSI8 78 aa6.65□□□□□ -1.35
HPS4-209ENST00000466781 SHISA2Q6UWI4 295 aa6.65□□□□□ -1.35
HPS4-209ENST00000466781 MSRB1Q9NZV6 116 aa6.65□□□□□ -1.35
HPS4-209ENST00000466781 UFSP1Q6NVU6 142 aa6.64□□□□□ -1.35
HPS4-209ENST00000466781 UPK3BQ9BT76 320 aa6.64□□□□□ -1.35
HPS4-209ENST00000466781 REG3AQ06141 175 aa6.64□□□□□ -1.35
HPS4-209ENST00000466781 REV3LO60673 3130 aa6.64□□□□□ -1.35
HPS4-209ENST00000466781 CACNA1EQ15878 2313 aa6.64□□□□□ -1.35
HPS4-209ENST00000466781 FAM110AQ9BQ89 295 aa6.64□□□□□ -1.35
HPS4-209ENST00000466781 INTS1Q8N201 2190 aaKnown RBP6.64□□□□□ -1.35
HPS4-209ENST00000466781 LY6G6DO95868 133 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 LINC00269Q8N2A0 174 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 IGHV1-58A0A0C4DH39 117 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 A0A0J9YX75 114 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 TRBV10-1A0A0K0K1A3 114 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 SPTBN5Q9NRC6 3674 aaKnown RBP6.63□□□□□ -1.35
HPS4-209ENST00000466781 SMIM9A6NGZ8 99 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 PDE6GP18545 87 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 C10orf91Q5T1B1 145 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 K7ERS5 55 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 NPSP0C0P6 89 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 MDFICQ9P1T7 246 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 PATE2Q6UY27 113 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 CLEC2BQ92478 149 aa6.63□□□□□ -1.35
HPS4-209ENST00000466781 NFE4Q86UQ8 179 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 ZFAND2AQ8N6M9 145 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 TNFRSF13BO14836 293 aaPredicted RBP6.62□□□□□ -1.35
HPS4-209ENST00000466781 SVIPQ8NHG7 77 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 SPTBN1Q01082 2364 aaKnown RBP6.62□□□□□ -1.35
HPS4-209ENST00000466781 FAM222AQ5U5X8 452 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 Q6YL49 198 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 FAM236AA0A1B0GUQ0 79 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 FAM236BA0A1B0GV22 79 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 DEFB1P60022 68 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 UNQ9165/PRO28630Q6UXU0 137 aa6.62□□□□□ -1.35
HPS4-209ENST00000466781 XIRP2A4UGR9 3374 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 Q6ZUT4 128 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 LYPD6BQ8NI32 183 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 UBE2D4Q9Y2X8 147 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 HEATR5AQ86XA9 2040 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 IGKV1D-37A0A075B6S9 117 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 A0A096LNI7 61 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 E9PLD3 99 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 USP17L23D6RBM5 183 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 HIST2H2BDQ6DRA6 164 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 FAM19A5Q7Z5A7 132 aaPredicted RBP6.61□□□□□ -1.35
HPS4-209ENST00000466781 ARFGEF3Q5TH69 2177 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 KIAA2026Q5HYC2 2103 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 TNRC6BQ9UPQ9 1833 aaKnown RBP6.61□□□□□ -1.35
HPS4-209ENST00000466781 BPY2O14599 106 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.61□□□□□ -1.35
HPS4-209ENST00000466781 CTRLP40313 264 aa6.61□□□□□ -1.35
HPS4-209ENST00000466781 CHCHD10Q8WYQ3 142 aaPredicted RBP6.6□□□□□ -1.35
HPS4-209ENST00000466781 SS18L2Q9UHA2 77 aa6.6□□□□□ -1.35
HPS4-209ENST00000466781 IGKV2D-26A0A0A0MRZ7 120 aa6.6□□□□□ -1.35
HPS4-209ENST00000466781 TRAV10A0A0B4J240 114 aa6.6□□□□□ -1.35
HPS4-209ENST00000466781 CRYGBP07316 175 aa6.6□□□□□ -1.35
HPS4-209ENST00000466781 H7C423 109 aa6.59□□□□□ -1.35
HPS4-209ENST00000466781 ZNF706Q9Y5V0 76 aaPredicted RBP6.59□□□□□ -1.35
HPS4-209ENST00000466781 MSMPQ1L6U9 139 aa6.59□□□□□ -1.35
HPS4-209ENST00000466781 ANKRD39Q53RE8 183 aa6.59□□□□□ -1.35
HPS4-209ENST00000466781 Q6ZTI0 123 aa6.59□□□□□ -1.35
HPS4-209ENST00000466781 B5MCH6 92 aa6.59□□□□□ -1.35
HPS4-209ENST00000466781 IGLV1-47P01700 117 aa6.59□□□□□ -1.35
HPS4-209ENST00000466781 LINC00173Q6ZV60 143 aa6.59□□□□□ -1.35
HPS4-209ENST00000466781 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.59□□□□□ -1.35
HPS4-209ENST00000466781 COL5A1P20908 1838 aaPredicted RBP6.59□□□□□ -1.35
HPS4-209ENST00000466781 ODF3L1Q8IXM7 274 aa6.59□□□□□ -1.36
HPS4-209ENST00000466781 MIFP14174 115 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 C20orf203Q8NBC4 194 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 ODF3Q96PU9 254 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 LY6G6CO95867 125 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 MIAQ16674 131 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 P0DMU3 169 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 FAM231AP0DMU4 169 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 FAM231CP0DMU5 169 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 TP53TG3Q9ULZ0 132 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 ALPK2Q86TB3 2170 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 UBE2D3P61077 147 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 CEMP1Q6PRD7 247 aaPredicted RBP6.58□□□□□ -1.36
HPS4-209ENST00000466781 FAM167A-AS1Q96KT0 104 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 HIGD1BQ9P298 99 aa6.58□□□□□ -1.36
HPS4-209ENST00000466781 M0R2N4 97 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 TEN1Q86WV5 123 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 CACNA1BQ00975 2339 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 TNRC6AQ8NDV7 1962 aaKnown RBP6.57□□□□□ -1.36
HPS4-209ENST00000466781 H3BT86 120 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 Q6ZSR3 168 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 AKAP6Q13023 2319 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 LMO4P61968 165 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 CACNA1DQ01668 2161 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 IGLV2-18A0A075B6J9 118 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 TAX1BP3O14907 124 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 FOXI1Q12951 378 aa6.57□□□□□ -1.36
HPS4-209ENST00000466781 CCDC140Q96MF4 163 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms