RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TMEM218A2RU14 115 aa12.14□□□□□ -0.47
COL7A1-205ENST00000465238 LINC00315P59091 139 aa12.14□□□□□ -0.47
COL7A1-205ENST00000465238 UPK3BQ9BT76 320 aa12.14□□□□□ -0.47
COL7A1-205ENST00000465238 NAT8BQ9UHF3 227 aa12.14□□□□□ -0.47
COL7A1-205ENST00000465238 HSPG2P98160 4391 aa12.14□□□□□ -0.47
COL7A1-205ENST00000465238 A0A1B0GUT8 65 aa12.13□□□□□ -0.47
COL7A1-205ENST00000465238 F8W036 122 aa12.13□□□□□ -0.47
COL7A1-205ENST00000465238 PPP1R2P9O14990 202 aa12.13□□□□□ -0.47
COL7A1-205ENST00000465238 RPL36AP83881 106 aaKnown RBP12.13□□□□□ -0.47
COL7A1-205ENST00000465238 RPL36ALQ969Q0 106 aaKnown RBP12.13□□□□□ -0.47
COL7A1-205ENST00000465238 Q9UF83 564 aa12.13□□□□□ -0.47
COL7A1-205ENST00000465238 LRP1BQ9NZR2 4599 aa12.12□□□□□ -0.47
COL7A1-205ENST00000465238 H7C1H1 209 aa12.12□□□□□ -0.47
COL7A1-205ENST00000465238 CDK2AP2O75956 126 aa12.12□□□□□ -0.47
COL7A1-205ENST00000465238 TIRAPP58753 221 aa12.12□□□□□ -0.47
COL7A1-205ENST00000465238 NUP35Q8NFH5 326 aa12.12□□□□□ -0.47
COL7A1-205ENST00000465238 TRBV7-3A0A075B6L6 115 aa12.11□□□□□ -0.47
COL7A1-205ENST00000465238 SMIM27A0A1W2PRY6 76 aa12.11□□□□□ -0.47
COL7A1-205ENST00000465238 MT-ND4LP03901 98 aa12.11□□□□□ -0.47
COL7A1-205ENST00000465238 RIGQ13278 110 aa12.11□□□□□ -0.47
COL7A1-205ENST00000465238 GTSF1LQ9H1H1 148 aa12.11□□□□□ -0.47
COL7A1-205ENST00000465238 SIVA1O15304 175 aa12.1□□□□□ -0.47
COL7A1-205ENST00000465238 LINC00694P0DN24 101 aa12.1□□□□□ -0.47
COL7A1-205ENST00000465238 SUMO4Q6EEV6 95 aa12.1□□□□□ -0.47
COL7A1-205ENST00000465238 KRTAP1-5Q9BYS1 174 aa12.1□□□□□ -0.47
COL7A1-205ENST00000465238 TRAV8-6A0A0B4J262 113 aa12.09□□□□□ -0.47
COL7A1-205ENST00000465238 BTF3P20290 206 aaKnown RBP12.09□□□□□ -0.47
COL7A1-205ENST00000465238 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.09□□□□□ -0.47
COL7A1-205ENST00000465238 NEXN-AS1Q8NBZ9 246 aa12.09□□□□□ -0.47
COL7A1-205ENST00000465238 ANAPC16Q96DE5 110 aa12.09□□□□□ -0.47
COL7A1-205ENST00000465238 SEC11CQ9BY50 192 aa12.09□□□□□ -0.47
COL7A1-205ENST00000465238 KRTAP4-5Q9BYR2 181 aa12.09□□□□□ -0.47
COL7A1-205ENST00000465238 M0QY20 66 aa12.08□□□□□ -0.48
COL7A1-205ENST00000465238 ADCYAP1P18509 176 aa12.08□□□□□ -0.48
COL7A1-205ENST00000465238 UBE2D3P61077 147 aa12.08□□□□□ -0.48
COL7A1-205ENST00000465238 UBE2D2P62837 147 aa12.08□□□□□ -0.48
COL7A1-205ENST00000465238 OR10J3Q5JRS4 329 aa12.08□□□□□ -0.48
COL7A1-205ENST00000465238 LELP1Q5T871 98 aa12.08□□□□□ -0.48
COL7A1-205ENST00000465238 TNFRSF18Q9Y5U5 241 aa12.08□□□□□ -0.48
COL7A1-205ENST00000465238 RASL11AQ6T310 242 aa12.07□□□□□ -0.48
COL7A1-205ENST00000465238 SPATA12Q7Z6I5 190 aa12.07□□□□□ -0.48
COL7A1-205ENST00000465238 DNAJC30Q96LL9 226 aa12.07□□□□□ -0.48
COL7A1-205ENST00000465238 A0A087WWC5 75 aa12.06□□□□□ -0.48
COL7A1-205ENST00000465238 WFDC10BQ8IUB3 73 aa12.06□□□□□ -0.48
COL7A1-205ENST00000465238 TMEM191AQ9H0A3 160 aa12.06□□□□□ -0.48
COL7A1-205ENST00000465238 A0A1B0GW15 77 aa12.05□□□□□ -0.48
COL7A1-205ENST00000465238 MAPKAPK5-AS1Q8N8E1 139 aa12.05□□□□□ -0.48
COL7A1-205ENST00000465238 NIT2Q9NQR4 276 aa12.05□□□□□ -0.48
COL7A1-205ENST00000465238 TRAV9-2A0A087WT02 112 aa12.04□□□□□ -0.48
COL7A1-205ENST00000465238 GATD1Q8NB37 220 aa12.04□□□□□ -0.48
COL7A1-205ENST00000465238 DNAH5Q8TE73 4624 aa12.03□□□□□ -0.48
COL7A1-205ENST00000465238 TRAV26-2A0A0B4J265 109 aa12.03□□□□□ -0.48
COL7A1-205ENST00000465238 IGHV3-38A0A0C4DH36 116 aa12.03□□□□□ -0.48
COL7A1-205ENST00000465238 S100A8P05109 93 aa12.03□□□□□ -0.48
COL7A1-205ENST00000465238 CAMPP49913 170 aa12.03□□□□□ -0.48
COL7A1-205ENST00000465238 MRPL54Q6P161 138 aaKnown RBP12.03□□□□□ -0.48
COL7A1-205ENST00000465238 DAZ4Q86SG3 579 aaKnown RBP12.03□□□□□ -0.48
COL7A1-205ENST00000465238 FRZBQ92765 325 aa12.03□□□□□ -0.48
COL7A1-205ENST00000465238 DAZ3Q9NR90 486 aaKnown RBP12.03□□□□□ -0.48
COL7A1-205ENST00000465238 APOBP04114 4563 aaKnown RBP12.03□□□□□ -0.48
COL7A1-205ENST00000465238 DNAH10OSP0CZ25 163 aa12.02□□□□□ -0.49
COL7A1-205ENST00000465238 C10orf91Q5T1B1 145 aa12.02□□□□□ -0.49
COL7A1-205ENST00000465238 RAB4AP20338 218 aa12.01□□□□□ -0.49
COL7A1-205ENST00000465238 TMEM97Q5BJF2 176 aa12.01□□□□□ -0.49
COL7A1-205ENST00000465238 AMN1Q8IY45 258 aa12.01□□□□□ -0.49
COL7A1-205ENST00000465238 CTDSP1Q9GZU7 261 aa12.01□□□□□ -0.49
COL7A1-205ENST00000465238 CARHSP1Q9Y2V2 147 aaKnown RBP12.01□□□□□ -0.49
COL7A1-205ENST00000465238 K7EP13 123 aa12□□□□□ -0.49
COL7A1-205ENST00000465238 KRTAP10-2P60368 255 aa12□□□□□ -0.49
COL7A1-205ENST00000465238 HBBP68871 147 aa12□□□□□ -0.49
COL7A1-205ENST00000465238 RNF185Q96GF1 192 aa12□□□□□ -0.49
COL7A1-205ENST00000465238 TRBV6-8A0A0A6YYG3 113 aa11.99□□□□□ -0.49
COL7A1-205ENST00000465238 LINC01556Q5JQF7 62 aa11.99□□□□□ -0.49
COL7A1-205ENST00000465238 KCNIP4Q6PIL6 250 aa11.99□□□□□ -0.49
COL7A1-205ENST00000465238 ATP5L2Q7Z4Y8 100 aa11.99□□□□□ -0.49
COL7A1-205ENST00000465238 Q8N1X5 172 aa11.99□□□□□ -0.49
COL7A1-205ENST00000465238 MRAP2Q96G30 205 aa11.99□□□□□ -0.49
COL7A1-205ENST00000465238 A0A1B0GXF2 115 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 IGHV3-30P01768 117 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 IGHV3-33P01772 117 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 IGHV3-30-3P0DP02 117 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 IGHV3-30-5P0DP03 117 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 NDUFA5Q16718 116 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 FAM104BQ5XKR9 115 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 Q6ZRN7 208 aaPredicted RBP11.98□□□□□ -0.49
COL7A1-205ENST00000465238 C10orf126Q8N4M7 172 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 RPL39LQ96EH5 51 aaKnown RBP11.98□□□□□ -0.49
COL7A1-205ENST00000465238 IMMP2LQ96T52 175 aa11.98□□□□□ -0.49
COL7A1-205ENST00000465238 C7orf77A4D0Y5 90 aa11.97□□□□□ -0.49
COL7A1-205ENST00000465238 CLRN3Q8NCR9 226 aa11.97□□□□□ -0.49
COL7A1-205ENST00000465238 BTF3L4Q96K17 158 aa11.97□□□□□ -0.49
COL7A1-205ENST00000465238 URGCP-MRPS24S4R325 110 aa11.97□□□□□ -0.49
COL7A1-205ENST00000465238 APOC3P02656 99 aa11.96□□□□□ -0.49
COL7A1-205ENST00000465238 RHEBQ15382 184 aa11.96□□□□□ -0.49
COL7A1-205ENST00000465238 TRBV25-1A0A075B6N4 114 aa11.95□□□□□ -0.5
COL7A1-205ENST00000465238 PPP1R17O96001 155 aa11.95□□□□□ -0.5
COL7A1-205ENST00000465238 MRPL51Q4U2R6 128 aaKnown RBP11.95□□□□□ -0.5
COL7A1-205ENST00000465238 NTM-AS1Q6ZSK4 140 aa11.95□□□□□ -0.5
COL7A1-205ENST00000465238 NIT1Q86X76 327 aa11.95□□□□□ -0.5
COL7A1-205ENST00000465238 CHCHD5Q9BSY4 110 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms