RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 RNF183Q96D59 192 aa9.3□□□□□ -0.92
HDAC4-208ENST00000463007 LRRK2Q5S007 2527 aa9.3□□□□□ -0.92
HDAC4-208ENST00000463007 MXRA5Q9NR99 2828 aa9.3□□□□□ -0.92
HDAC4-208ENST00000463007 CHD6Q8TD26 2715 aa9.3□□□□□ -0.92
HDAC4-208ENST00000463007 TRBV20-1A0A075B6N2 111 aa9.3□□□□□ -0.92
HDAC4-208ENST00000463007 J3QQQ9 107 aa9.3□□□□□ -0.92
HDAC4-208ENST00000463007 DOPEY1Q5JWR5 2465 aa9.29□□□□□ -0.92
HDAC4-208ENST00000463007 A0A0U1RRA0 63 aa9.29□□□□□ -0.92
HDAC4-208ENST00000463007 NIPBLQ6KC79 2804 aaeCLIP9.29□□□□□ -0.92
HDAC4-208ENST00000463007 KNCNA6PVL3 124 aa9.29□□□□□ -0.92
HDAC4-208ENST00000463007 H3BUX3 64 aa9.29□□□□□ -0.92
HDAC4-208ENST00000463007 PIMREGQ9BSJ6 248 aa9.29□□□□□ -0.92
HDAC4-208ENST00000463007 A0A0J9YXV3 536 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 A8MZ25 164 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 IGHV4-38-2P0DP08 117 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 SPINK13Q1W4C9 94 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 Q6ZSV7 163 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 FAM223BA6NKX1 122 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 P0DMU3 169 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 FAM231AP0DMU4 169 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 FAM231CP0DMU5 169 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 COX6B1P14854 86 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 UBE2D1P51668 147 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 C10orf99Q6UWK7 81 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 FAM223AQ8IWN6 122 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 CCL19Q99731 98 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 PRO1854Q9UHT4 67 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 IGHV4-4A0A075B6R2 117 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 IGHV4-30-2A0A087WSY4 118 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 ELANEP08246 267 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 SHISA2Q6UWI4 295 aa9.28□□□□□ -0.92
HDAC4-208ENST00000463007 MRPL53Q96EL3 112 aaKnown RBP9.28□□□□□ -0.92
HDAC4-208ENST00000463007 A6NDX4 124 aa9.27□□□□□ -0.93
HDAC4-208ENST00000463007 TEN1Q86WV5 123 aa9.27□□□□□ -0.93
HDAC4-208ENST00000463007 PPDPFLQ8WWR9 84 aa9.27□□□□□ -0.93
HDAC4-208ENST00000463007 ANAPC13Q9BS18 74 aa9.27□□□□□ -0.93
HDAC4-208ENST00000463007 FN1P02751 2386 aaKnown RBP9.27□□□□□ -0.93
HDAC4-208ENST00000463007 OVOL1O14753 267 aa9.27□□□□□ -0.93
HDAC4-208ENST00000463007 HIST2H2BDQ6DRA6 164 aa9.27□□□□□ -0.93
HDAC4-208ENST00000463007 MUSTN1Q8IVN3 82 aa9.27□□□□□ -0.93
HDAC4-208ENST00000463007 TRAV8-3A0A0A6YYJ7 113 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 SLC25A20O43772 301 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 IGHV3-30P01768 117 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 IGHV3-30-5P0DP03 117 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 C10orf126Q8N4M7 172 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 NTN5Q8WTR8 489 aaPredicted RBP9.26□□□□□ -0.93
HDAC4-208ENST00000463007 ANKRD17O75179 2603 aaKnown RBP9.26□□□□□ -0.93
HDAC4-208ENST00000463007 VCYO14598 125 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 IGHG2P01859 326 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 SCGB1A1P11684 91 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 DAND5Q8N907 189 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 A0A096LNT2 108 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 IGIPA6NJ69 53 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 CFHR3Q02985 330 aa9.26□□□□□ -0.93
HDAC4-208ENST00000463007 PROK1P58294 105 aa9.25□□□□□ -0.93
HDAC4-208ENST00000463007 ZNF876PQ49A33 203 aa9.25□□□□□ -0.93
HDAC4-208ENST00000463007 ERG28Q9UKR5 140 aa9.25□□□□□ -0.93
HDAC4-208ENST00000463007 TEX49A0A1B0GTD5 131 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 B5MCH6 92 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 SOCS3O14543 225 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 TEX15Q9BXT5 2789 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 H3BUA1 57 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 AVPP01185 164 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 UBE2D3P61077 147 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 UBE2D2P62837 147 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 Q8N1Y9 231 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 Q9UF83 564 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 MSMBP08118 114 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 LINC00315P59091 139 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 SLC25A29Q8N8R3 303 aa9.24□□□□□ -0.93
HDAC4-208ENST00000463007 IGLV1-40P01703 118 aa9.23□□□□□ -0.93
HDAC4-208ENST00000463007 LYRM7Q5U5X0 104 aa9.23□□□□□ -0.93
HDAC4-208ENST00000463007 ZNF625Q96I27 306 aaPredicted RBP9.23□□□□□ -0.93
HDAC4-208ENST00000463007 VCX2Q9H322 139 aa9.23□□□□□ -0.93
HDAC4-208ENST00000463007 UBR5O95071 2799 aaPredicted RBP9.23□□□□□ -0.93
HDAC4-208ENST00000463007 TEX29Q8N6K0 151 aa9.23□□□□□ -0.93
HDAC4-208ENST00000463007 C3orf56Q8N813 242 aa9.23□□□□□ -0.93
HDAC4-208ENST00000463007 IGHV3-38A0A0C4DH36 116 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 POLR2KP53803 58 aaKnown RBP9.22□□□□□ -0.93
HDAC4-208ENST00000463007 NDUFA4O00483 81 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 CRLF1O75462 422 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 EIF4EBP3O60516 100 aaPredicted RBP9.22□□□□□ -0.93
HDAC4-208ENST00000463007 ATP5J2P56134 94 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 HERV-K104P63124 156 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 ZFAND6Q6FIF0 208 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 MAPK1IP1LQ8NDC0 245 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 DUX3Q96PT4 197 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 DAZ1Q9NQZ3 744 aaKnown RBP9.22□□□□□ -0.93
HDAC4-208ENST00000463007 KIF25-AS1Q9Y6Z4 181 aa9.22□□□□□ -0.93
HDAC4-208ENST00000463007 TRAV4A0A0B4J268 109 aa9.21□□□□□ -0.94
HDAC4-208ENST00000463007 TCTEX1D4Q5JR98 221 aa9.21□□□□□ -0.94
HDAC4-208ENST00000463007 FAM19A4Q96LR4 140 aa9.21□□□□□ -0.94
HDAC4-208ENST00000463007 LENEPQ9Y5L5 61 aa9.21□□□□□ -0.94
HDAC4-208ENST00000463007 PPP1R17O96001 155 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 CLEC2BQ92478 149 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 SNCGO76070 127 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 CD28P10747 220 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 USMG5Q96IX5 58 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 MTORP42345 2549 aa9.2□□□□□ -0.94
HDAC4-208ENST00000463007 USP24Q9UPU5 2620 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms