RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 TGIF2-C20orf24A0A0A6YYL0 155 aa8.65□□□□□ -1.02
HDAC4-206ENST00000460235 CCL18P55774 89 aa8.65□□□□□ -1.02
HDAC4-206ENST00000460235 FABP9Q0Z7S8 132 aa8.65□□□□□ -1.02
HDAC4-206ENST00000460235 MRPL51Q4U2R6 128 aaKnown RBP8.65□□□□□ -1.02
HDAC4-206ENST00000460235 TMEM136Q6ZRR5 245 aa8.65□□□□□ -1.02
HDAC4-206ENST00000460235 C20orf78Q9BR46 151 aa8.65□□□□□ -1.02
HDAC4-206ENST00000460235 ST20Q9HBF5 79 aa8.65□□□□□ -1.02
HDAC4-206ENST00000460235 ATP6V0E2Q8NHE4 81 aa8.64□□□□□ -1.03
HDAC4-206ENST00000460235 ZNRF2Q8NHG8 242 aa8.64□□□□□ -1.03
HDAC4-206ENST00000460235 RNF185Q96GF1 192 aa8.64□□□□□ -1.03
HDAC4-206ENST00000460235 VSIG2Q96IQ7 327 aa8.64□□□□□ -1.03
HDAC4-206ENST00000460235 TRBV6-5A0A0K0K1A5 114 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 GAGE12JA6NER3 117 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 P0DMU3 169 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 FAM231AP0DMU4 169 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 FAM231CP0DMU5 169 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 RPS10P46783 165 aaKnown RBP8.63□□□□□ -1.03
HDAC4-206ENST00000460235 TIRAPP58753 221 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 GAGE1Q13065 139 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 GAGE4Q13068 117 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 GAGE5Q13069 117 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 GAGE13Q4V321 117 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 ZFAND6Q6FIF0 208 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 Q6ZSN1 163 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 PRELID3AQ96N28 172 aa8.63□□□□□ -1.03
HDAC4-206ENST00000460235 MRPL18Q9H0U6 180 aaKnown RBP8.63□□□□□ -1.03
HDAC4-206ENST00000460235 D6R8Y8 96 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 VCYO14598 125 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 RAB5AP20339 215 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 PKIAP61925 76 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 NEXN-AS1Q8NBZ9 246 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 YPEL4Q96NS1 127 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 KIR2DL4Q99706 377 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 GTSF1LQ9H1H1 148 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 MAP1LC3AQ9H492 121 aa8.62□□□□□ -1.03
HDAC4-206ENST00000460235 A0A096LPF7 62 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 TRAV8-6A0A0B4J262 113 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 TRAV26-2A0A0B4J265 109 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 TNFRSF6BO95407 300 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 NCR2O95944 276 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 PMCHP20382 165 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 G0S2P27469 103 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 UBE2D3P61077 147 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 SUMO2P61956 95 aaKnown RBP8.61□□□□□ -1.03
HDAC4-206ENST00000460235 UBE2D2P62837 147 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 RPL32P62910 135 aaKnown RBP8.61□□□□□ -1.03
HDAC4-206ENST00000460235 SMAGPQ0VAQ4 97 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 COTL1Q14019 142 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 CASC10Q5T4H9 136 aa8.61□□□□□ -1.03
HDAC4-206ENST00000460235 PRKDCP78527 4128 aaKnown RBP8.6□□□□□ -1.03
HDAC4-206ENST00000460235 SDHAF1A6NFY7 115 aa8.6□□□□□ -1.03
HDAC4-206ENST00000460235 COLCA2A8K830 154 aa8.6□□□□□ -1.03
HDAC4-206ENST00000460235 I3L3M4 83 aa8.6□□□□□ -1.03
HDAC4-206ENST00000460235 K7EMI3 77 aa8.6□□□□□ -1.03
HDAC4-206ENST00000460235 UBE2DNLQ8IWF7 75 aa8.6□□□□□ -1.03
HDAC4-206ENST00000460235 NXT2Q9NPJ8 142 aaKnown RBP8.6□□□□□ -1.03
HDAC4-206ENST00000460235 APLNQ9ULZ1 77 aa8.6□□□□□ -1.03
HDAC4-206ENST00000460235 NACAE9PAV3 2078 aa8.6□□□□□ -1.03
HDAC4-206ENST00000460235 FCER1GP30273 86 aa8.59□□□□□ -1.03
HDAC4-206ENST00000460235 RAB5BP61020 215 aa8.59□□□□□ -1.03
HDAC4-206ENST00000460235 DNAH9Q9NYC9 4486 aa8.59□□□□□ -1.03
HDAC4-206ENST00000460235 TRBV25-1A0A075B6N4 114 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 TRBV27A0A0K0K1C4 114 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 PRSS47A8MTI9 375 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 SCO1O75880 301 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 NRACQ8N912 160 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 TMEM18Q96B42 140 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 RPL39LQ96EH5 51 aaKnown RBP8.58□□□□□ -1.04
HDAC4-206ENST00000460235 TMEM70Q9BUB7 260 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 COL7A1Q02388 2944 aa8.58□□□□□ -1.04
HDAC4-206ENST00000460235 HUWE1Q7Z6Z7 4374 aaKnown RBP8.57□□□□□ -1.04
HDAC4-206ENST00000460235 LOC100131303A0A0U1RQF7 123 aa8.57□□□□□ -1.04
HDAC4-206ENST00000460235 LINC01549A6NIU2 74 aa8.57□□□□□ -1.04
HDAC4-206ENST00000460235 SMKR1H3BMG3 65 aa8.57□□□□□ -1.04
HDAC4-206ENST00000460235 LINC00694P0DN24 101 aa8.57□□□□□ -1.04
HDAC4-206ENST00000460235 POLR2KP53803 58 aaKnown RBP8.57□□□□□ -1.04
HDAC4-206ENST00000460235 LELP1Q5T871 98 aa8.57□□□□□ -1.04
HDAC4-206ENST00000460235 LYPD5Q6UWN5 251 aa8.57□□□□□ -1.04
HDAC4-206ENST00000460235 PRSS3P2Q8NHM4 247 aa8.57□□□□□ -1.04
HDAC4-206ENST00000460235 ALKBH7Q9BT30 221 aaPredicted RBP8.57□□□□□ -1.04
HDAC4-206ENST00000460235 IGHV1-24A0A0C4DH33 117 aa8.56□□□□□ -1.04
HDAC4-206ENST00000460235 K7EP13 123 aa8.56□□□□□ -1.04
HDAC4-206ENST00000460235 NPYP01303 97 aa8.56□□□□□ -1.04
HDAC4-206ENST00000460235 KIAA1644Q3SXP7 199 aa8.56□□□□□ -1.04
HDAC4-206ENST00000460235 SMIM2Q9BVW6 85 aa8.56□□□□□ -1.04
HDAC4-206ENST00000460235 TGP01266 2768 aa8.56□□□□□ -1.04
HDAC4-206ENST00000460235 TRAV9-2A0A087WT02 112 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 TRBV6-8A0A0A6YYG3 113 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 H7C423 109 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 UBE2L6O14933 153 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 TRGC2P03986 189 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 AMTP48728 403 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 ORMDL2Q53FV1 153 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 LGALS9CQ6DKI2 356 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 Q8N8P6 123 aa8.55□□□□□ -1.04
HDAC4-206ENST00000460235 MRPS16Q9Y3D3 137 aaKnown RBP8.55□□□□□ -1.04
HDAC4-206ENST00000460235 IQCJQ1A5X6 159 aa8.54□□□□□ -1.04
HDAC4-206ENST00000460235 ESRGQ1W209 222 aa8.54□□□□□ -1.04
HDAC4-206ENST00000460235 FA2HQ7L5A8 372 aa8.54□□□□□ -1.04
HDAC4-206ENST00000460235 UPK3BQ9BT76 320 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms