RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 FAM213BQ8TBF2 198 aa0.06□□□□□ -2.4
USP40-209ENST00000452724 SSC5DA1L4H1 1573 aa0.06□□□□□ -2.4
USP40-209ENST00000452724 MAP2P11137 1827 aaKnown RBP0.06□□□□□ -2.4
USP40-209ENST00000452724 VIRMAQ69YN4 1812 aaKnown RBP0.06□□□□□ -2.4
USP40-209ENST00000452724 CEP152O94986 1710 aa0.05□□□□□ -2.4
USP40-209ENST00000452724 CADP27708 2225 aa0.05□□□□□ -2.4
USP40-209ENST00000452724 TRBV10-3A0A0K0K1G6 114 aa0.05□□□□□ -2.4
USP40-209ENST00000452724 SMIM6P0DI80 62 aa0.05□□□□□ -2.4
USP40-209ENST00000452724 SELENOWP63302 87 aa0.05□□□□□ -2.4
USP40-209ENST00000452724 COPS9Q8WXC6 57 aa0.05□□□□□ -2.4
USP40-209ENST00000452724 ZFYVE26Q68DK2 2539 aa0.05□□□□□ -2.4
USP40-209ENST00000452724 UNC13AQ9UPW8 1703 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 ZNF518AQ6AHZ1 1483 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 IFT140Q96RY7 1462 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 PIGBOS1A0A0B4J2F0 54 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 FAM92AA1XBS5 289 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 SIX6O95475 246 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 ARPC4P59998 168 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 BAGE3Q86Y29 109 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 UBE2DNLQ8IWF7 75 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 SPTSSBQ8NFR3 76 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 U3KQA8 63 aa0.04□□□□□ -2.4
USP40-209ENST00000452724 PTPRZ1P23471 2315 aaPredicted RBP0.04□□□□□ -2.4
USP40-209ENST00000452724 F5P12259 2224 aa0.03□□□□□ -2.4
USP40-209ENST00000452724 S100A12P80511 92 aa0.03□□□□□ -2.4
USP40-209ENST00000452724 LINC00312Q9Y6C7 94 aa0.03□□□□□ -2.4
USP40-209ENST00000452724 KIF13AQ9H1H9 1805 aa0.03□□□□□ -2.4
USP40-209ENST00000452724 CDK5RAP2Q96SN8 1893 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 A0A0D9SFI3 127 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 G3V318 75 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 SPINK8P0C7L1 97 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 CCDC58Q4VC31 144 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 C12orf73Q69YU5 71 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 SNRNP25Q9BV90 132 aaKnown RBP0.02□□□□□ -2.41
USP40-209ENST00000452724 SEC11CQ9BY50 192 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 CYP4F30PQ9H0H9 118 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 AGPAT4-IT1Q9H0P7 198 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 MACF1Q9UPN3 7388 aaKnown RBP0.02□□□□□ -2.41
USP40-209ENST00000452724 ZMYM4Q5VZL5 1548 aa0.02□□□□□ -2.41
USP40-209ENST00000452724 DMBT1Q9UGM3 2413 aaPredicted RBP0.02□□□□□ -2.41
USP40-209ENST00000452724 TNS1Q9HBL0 1735 aaKnown RBP0.01□□□□□ -2.41
USP40-209ENST00000452724 TRAV1-2A0A0B4J238 106 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 SPAARA0A1B0GVQ0 90 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 ZNF815PA8K554 130 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 S100A7L2Q5SY68 101 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 SSBP3-AS1Q7Z2R9 100 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 CNFNQ9BYD5 112 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 GRIN2AQ12879 1464 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 LRP1Q07954 4544 aaKnown RBP0.01□□□□□ -2.41
USP40-209ENST00000452724 LAMB1P07942 1786 aa0.01□□□□□ -2.41
USP40-209ENST00000452724 POLQO75417 2590 aa0□□□□□ -2.41
USP40-209ENST00000452724 HCG22E2RYF7 251 aa0□□□□□ -2.41
USP40-209ENST00000452724 NDUFA2O43678 99 aa0□□□□□ -2.41
USP40-209ENST00000452724 HIST1H1DP16402 221 aaKnown RBP0□□□□□ -2.41
USP40-209ENST00000452724 GOLGA3Q08378 1498 aa0□□□□□ -2.41
USP40-209ENST00000452724 CACNA1CQ13936 2221 aa0□□□□□ -2.41
USP40-209ENST00000452724 PXDNQ92626 1479 aa0□□□□□ -2.41
USP40-209ENST00000452724 ARL11Q969Q4 196 aa0□□□□□ -2.41
USP40-209ENST00000452724 LINC00470Q9BZP3 86 aa0□□□□□ -2.41
USP40-209ENST00000452724 RERGLQ9H628 205 aa0□□□□□ -2.41
USP40-209ENST00000452724 NCOR2Q9Y618 2525 aa0□□□□□ -2.41
USP40-209ENST00000452724 R4GMQ9 66 aa0□□□□□ -2.41
USP40-209ENST00000452724 SSPOA2VEC9 5147 aa-0□□□□□ -2.41
USP40-209ENST00000452724 F8P00451 2351 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 ANK2Q01484 3957 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 PLXNA1Q9UIW2 1896 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 NRXN2Q9P2S2 1712 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 IGSF10Q6WRI0 2623 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 HMGN1P05114 100 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 CCL18P55774 89 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 PDCD10Q9BUL8 212 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 SERP1Q9Y6X1 66 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 OTOGQ6ZRI0 2925 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 PHIPQ8WWQ0 1821 aa-0.01□□□□□ -2.41
USP40-209ENST00000452724 LRRC37A3O60309 1634 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 MYOM3Q5VTT5 1437 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 CASKIN1Q8WXD9 1431 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 TRAV13-2A0A0B4J235 113 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 BTG2P78543 158 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 Q6AWC8 147 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 AQP10Q96PS8 301 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 SPRR2GQ9BYE4 73 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 NAA60Q9H7X0 242 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 ASXL3Q9C0F0 2248 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 DOCK11Q5JSL3 2073 aa-0.02□□□□□ -2.41
USP40-209ENST00000452724 IGF2RP11717 2491 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 HIVEP3Q5T1R4 2406 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 AKAP11Q9UKA4 1901 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 K7EP13 123 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 PPP1R17O96001 155 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 CFAP126Q5VTH2 177 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 Q8N8P6 123 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 SMIM4Q8WVI0 70 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 C1orf54Q8WWF1 131 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 LENEPQ9Y5L5 61 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 CELSR2Q9HCU4 2923 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 HRNRQ86YZ3 2850 aaPredicted RBP-0.03□□□□□ -2.41
USP40-209ENST00000452724 MYH13Q9UKX3 1938 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 CFTRP13569 1480 aa-0.03□□□□□ -2.41
USP40-209ENST00000452724 ZNF609O15014 1411 aa-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms