RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 FAM236AA0A1B0GUQ0 79 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 FAM236BA0A1B0GV22 79 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 NDUFA11Q86Y39 141 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 NLRC5Q86WI3 1866 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 TMEM89A2RUT3 159 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 Q6ZTI0 123 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 NACAE9PAV3 2078 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 LINC01548A6NM66 108 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 H3BQ85 93 aa11.72□□□□□ -0.53
PTPRF-206ENST00000429895 TRBV6-1A0A0K0K1D8 114 aa11.71□□□□□ -0.53
PTPRF-206ENST00000429895 TANC1Q9C0D5 1861 aa11.71□□□□□ -0.53
PTPRF-206ENST00000429895 CRYGDP07320 174 aa11.71□□□□□ -0.53
PTPRF-206ENST00000429895 ZGRF1Q86YA3 2104 aa11.71□□□□□ -0.53
PTPRF-206ENST00000429895 A0A087WZ39 114 aa11.71□□□□□ -0.54
PTPRF-206ENST00000429895 PCNX1Q96RV3 2341 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 TDRG1Q3Y452 100 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 FAM222AQ5U5X8 452 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 TNRC6BQ9UPQ9 1833 aaKnown RBP11.7□□□□□ -0.54
PTPRF-206ENST00000429895 REG3AQ06141 175 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 IGHV1-58A0A0C4DH39 117 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 MSMPQ1L6U9 139 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 Q8NA96 180 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 C14orf177Q52M58 125 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 LYPD6BQ8NI32 183 aa11.7□□□□□ -0.54
PTPRF-206ENST00000429895 FAM19A1Q7Z5A9 133 aa11.69□□□□□ -0.54
PTPRF-206ENST00000429895 MED14OSP0DP75 135 aa11.69□□□□□ -0.54
PTPRF-206ENST00000429895 JMJD7-PLA2G4BH0Y9G9 81 aa11.69□□□□□ -0.54
PTPRF-206ENST00000429895 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-206ENST00000429895 E9PLD3 99 aa11.69□□□□□ -0.54
PTPRF-206ENST00000429895 DEFB131BA0A096LNP1 70 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 IGHV4-31P0DP07 118 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 PLCE1Q9P212 2302 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 HILS1P60008 231 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 LINC00482Q8N8I6 264 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 CCDC140Q96MF4 163 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 WFDC2Q14508 124 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 CTRLP40313 264 aa11.68□□□□□ -0.54
PTPRF-206ENST00000429895 LOXL1Q08397 574 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-206ENST00000429895 TMEM256-PLSCR3K7ERE1 68 aa11.67□□□□□ -0.54
PTPRF-206ENST00000429895 MED13Q9UHV7 2174 aa11.67□□□□□ -0.54
PTPRF-206ENST00000429895 ATOX1O00244 68 aa11.67□□□□□ -0.54
PTPRF-206ENST00000429895 IGLV2-14P01704 120 aa11.67□□□□□ -0.54
PTPRF-206ENST00000429895 C20orf203Q8NBC4 194 aa11.67□□□□□ -0.54
PTPRF-206ENST00000429895 PLA2G2EQ9NZK7 142 aa11.67□□□□□ -0.54
PTPRF-206ENST00000429895 ZFAND2AQ8N6M9 145 aa11.66□□□□□ -0.54
PTPRF-206ENST00000429895 CASC2Q6XLA1 102 aa11.66□□□□□ -0.54
PTPRF-206ENST00000429895 ANAPC1Q9H1A4 1944 aa11.66□□□□□ -0.54
PTPRF-206ENST00000429895 CRYGBP07316 175 aa11.66□□□□□ -0.54
PTPRF-206ENST00000429895 FRMD6-AS1P0C7T7 363 aa11.66□□□□□ -0.54
PTPRF-206ENST00000429895 TNFRSF13BO14836 293 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-206ENST00000429895 FAM19A5Q7Z5A7 132 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-206ENST00000429895 PRORYQ9H606 182 aa11.65□□□□□ -0.54
PTPRF-206ENST00000429895 CACNA1HO95180 2353 aa11.65□□□□□ -0.54
PTPRF-206ENST00000429895 TRBV10-2A0A0K0K1G8 114 aa11.65□□□□□ -0.54
PTPRF-206ENST00000429895 CHCHD10Q8WYQ3 142 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-206ENST00000429895 IGKV1D-37A0A075B6S9 117 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 Q6YL49 198 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 KIR2DL5BA0A0G2JN68 375 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 KIR2DL5BA0A0G2JPC4 375 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 TEN1Q86WV5 123 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 KIR2DL5AQ8N109 375 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 CHD3Q12873 2000 aaKnown RBP11.64□□□□□ -0.55
PTPRF-206ENST00000429895 M0R2N4 97 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 SVIPQ8NHG7 77 aa11.64□□□□□ -0.55
PTPRF-206ENST00000429895 IGLV2-18A0A075B6J9 118 aa11.63□□□□□ -0.55
PTPRF-206ENST00000429895 ZNF80P51504 273 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-206ENST00000429895 ODF1Q14990 250 aa11.63□□□□□ -0.55
PTPRF-206ENST00000429895 NOTCH4Q99466 2003 aa11.63□□□□□ -0.55
PTPRF-206ENST00000429895 LMO4P61968 165 aa11.63□□□□□ -0.55
PTPRF-206ENST00000429895 UFSP1Q6NVU6 142 aa11.63□□□□□ -0.55
PTPRF-206ENST00000429895 NUP210Q8TEM1 1887 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-206ENST00000429895 TRBV10-1A0A0K0K1A3 114 aa11.63□□□□□ -0.55
PTPRF-206ENST00000429895 LINC00467Q9BRT7 94 aa11.62□□□□□ -0.55
PTPRF-206ENST00000429895 Q6ZSR3 168 aa11.61□□□□□ -0.55
PTPRF-206ENST00000429895 SCXQ7RTU7 201 aa11.61□□□□□ -0.55
PTPRF-206ENST00000429895 BPY2O14599 106 aa11.61□□□□□ -0.55
PTPRF-206ENST00000429895 FOXI1Q12951 378 aa11.61□□□□□ -0.55
PTPRF-206ENST00000429895 LRRC75A-AS1Q8N1F1 130 aa11.61□□□□□ -0.55
PTPRF-206ENST00000429895 PTH2Q96A98 100 aa11.61□□□□□ -0.55
PTPRF-206ENST00000429895 FBXL19-AS1Q494R0 122 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 TRAV23DV6A0A075B6W5 121 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 PLA2G5P39877 138 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 MIAQ16674 131 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 DEFB114Q30KQ6 69 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 KIF26AQ9ULI4 1882 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-206ENST00000429895 LYRM9A8MSI8 78 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 C20orf173Q96LM9 149 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 HIGD1BQ9P298 99 aa11.6□□□□□ -0.55
PTPRF-206ENST00000429895 SPRY4Q9C004 299 aa11.59□□□□□ -0.55
PTPRF-206ENST00000429895 ODF3BA8MYP8 253 aa11.59□□□□□ -0.55
PTPRF-206ENST00000429895 ADAMTS9Q9P2N4 1935 aa11.59□□□□□ -0.55
PTPRF-206ENST00000429895 UPK3BQ9BT76 320 aa11.59□□□□□ -0.55
PTPRF-206ENST00000429895 NDUFC2O95298 119 aa11.59□□□□□ -0.55
PTPRF-206ENST00000429895 SLPIP03973 132 aa11.59□□□□□ -0.55
PTPRF-206ENST00000429895 SPANXCQ9NY87 97 aa11.59□□□□□ -0.55
PTPRF-206ENST00000429895 IGF1P05019 195 aa11.58□□□□□ -0.55
PTPRF-206ENST00000429895 MED13LQ71F56 2210 aa11.58□□□□□ -0.56
PTPRF-206ENST00000429895 C10orf99Q6UWK7 81 aa11.58□□□□□ -0.56
PTPRF-206ENST00000429895 DCANP1Q8TF63 244 aa11.58□□□□□ -0.56
PTPRF-206ENST00000429895 SMIM20Q8N5G0 67 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms