RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 J3QL48 77 aa11.17□□□□□ -0.62
TRIM39-209ENST00000428728 RPL35P42766 123 aaKnown RBP11.17□□□□□ -0.62
TRIM39-209ENST00000428728 TMUB2Q71RG4 321 aa11.17□□□□□ -0.62
TRIM39-209ENST00000428728 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.17□□□□□ -0.62
TRIM39-209ENST00000428728 DNAH8Q96JB1 4490 aa11.16□□□□□ -0.62
TRIM39-209ENST00000428728 HLA-DQA1P01909 254 aa11.16□□□□□ -0.62
TRIM39-209ENST00000428728 SMIM17P0DL12 118 aa11.16□□□□□ -0.62
TRIM39-209ENST00000428728 ENHOQ6UWT2 76 aa11.16□□□□□ -0.62
TRIM39-209ENST00000428728 AP1S3Q96PC3 154 aa11.16□□□□□ -0.62
TRIM39-209ENST00000428728 SSBP4Q9BWG4 385 aaPredicted RBP11.16□□□□□ -0.62
TRIM39-209ENST00000428728 GNG13Q9P2W3 67 aa11.16□□□□□ -0.62
TRIM39-209ENST00000428728 HERC1Q15751 4861 aa11.16□□□□□ -0.62
TRIM39-209ENST00000428728 EIF5AP63241 154 aaKnown RBP11.15□□□□□ -0.62
TRIM39-209ENST00000428728 CLPSL2Q6UWE3 100 aa11.15□□□□□ -0.62
TRIM39-209ENST00000428728 TPPP3Q9BW30 176 aa11.15□□□□□ -0.62
TRIM39-209ENST00000428728 MANBALQ9NQG1 85 aa11.15□□□□□ -0.62
TRIM39-209ENST00000428728 MGPP08493 103 aa11.14□□□□□ -0.63
TRIM39-209ENST00000428728 GZMBP10144 247 aa11.14□□□□□ -0.63
TRIM39-209ENST00000428728 CCL20P78556 96 aa11.14□□□□□ -0.63
TRIM39-209ENST00000428728 C14orf177Q52M58 125 aa11.14□□□□□ -0.63
TRIM39-209ENST00000428728 CENPWQ5EE01 88 aa11.14□□□□□ -0.63
TRIM39-209ENST00000428728 CHAC1Q9BUX1 264 aa11.14□□□□□ -0.63
TRIM39-209ENST00000428728 PKIAP61925 76 aa11.13□□□□□ -0.63
TRIM39-209ENST00000428728 GAGE6Q13070 117 aa11.13□□□□□ -0.63
TRIM39-209ENST00000428728 NTM-AS1Q6ZSK4 140 aa11.13□□□□□ -0.63
TRIM39-209ENST00000428728 C11orf52Q96A22 123 aa11.13□□□□□ -0.63
TRIM39-209ENST00000428728 KIF25-AS1Q9Y6Z4 181 aa11.13□□□□□ -0.63
TRIM39-209ENST00000428728 USP17L23D6RBM5 183 aa11.12□□□□□ -0.63
TRIM39-209ENST00000428728 CIRBP-AS1Q8TBR5 109 aa11.12□□□□□ -0.63
TRIM39-209ENST00000428728 VAX2Q9UIW0 290 aa11.12□□□□□ -0.63
TRIM39-209ENST00000428728 TRBV25-1A0A075B6N4 114 aa11.11□□□□□ -0.63
TRIM39-209ENST00000428728 MIAQ16674 131 aa11.11□□□□□ -0.63
TRIM39-209ENST00000428728 TMEM97Q5BJF2 176 aa11.11□□□□□ -0.63
TRIM39-209ENST00000428728 FER1L6-AS1Q8NA97 138 aa11.11□□□□□ -0.63
TRIM39-209ENST00000428728 OR2D3Q8NGH3 330 aa11.11□□□□□ -0.63
TRIM39-209ENST00000428728 DEFB104AQ8WTQ1 72 aa11.11□□□□□ -0.63
TRIM39-209ENST00000428728 IGLC6P0CF74 106 aa11.1□□□□□ -0.63
TRIM39-209ENST00000428728 RBX1P62877 108 aa11.1□□□□□ -0.63
TRIM39-209ENST00000428728 DAZAP1Q96EP5 407 aaKnown RBP11.1□□□□□ -0.63
TRIM39-209ENST00000428728 RAB19A4D1S5 217 aa11.09□□□□□ -0.63
TRIM39-209ENST00000428728 IGLV2-8P01709 118 aa11.09□□□□□ -0.63
TRIM39-209ENST00000428728 GNG4P50150 75 aa11.09□□□□□ -0.63
TRIM39-209ENST00000428728 SUMO4Q6EEV6 95 aa11.09□□□□□ -0.63
TRIM39-209ENST00000428728 TRAV1-1A0A0B4J248 108 aa11.08□□□□□ -0.64
TRIM39-209ENST00000428728 RPS20P60866 119 aaKnown RBP11.08□□□□□ -0.64
TRIM39-209ENST00000428728 LINC00269Q8N2A0 174 aa11.08□□□□□ -0.64
TRIM39-209ENST00000428728 IGHV1-24A0A0C4DH33 117 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 C19orf71A6NCJ1 209 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 KRTAP29-1A8MX34 341 aaPredicted RBP11.07□□□□□ -0.64
TRIM39-209ENST00000428728 TEX46H3BTG2 121 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 H7C1H1 209 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 M0QY20 66 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 PRSS1P07477 247 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 RAB5CP51148 216 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 PRR34Q9NV39 138 aa11.07□□□□□ -0.64
TRIM39-209ENST00000428728 IGLV10-54A0A075B6I4 117 aa11.06□□□□□ -0.64
TRIM39-209ENST00000428728 P01737 135 aa11.06□□□□□ -0.64
TRIM39-209ENST00000428728 NKX2-5P52952 324 aaPredicted RBP11.06□□□□□ -0.64
TRIM39-209ENST00000428728 KRTAP10-4P60372 401 aaPredicted RBP11.06□□□□□ -0.64
TRIM39-209ENST00000428728 CACNG7P62955 275 aa11.06□□□□□ -0.64
TRIM39-209ENST00000428728 MEF2BQ02080 365 aaPredicted RBP11.06□□□□□ -0.64
TRIM39-209ENST00000428728 IQCJQ1A5X6 159 aa11.06□□□□□ -0.64
TRIM39-209ENST00000428728 TRBV20OR9-2A0A075B6H5 130 aa11.05□□□□□ -0.64
TRIM39-209ENST00000428728 XKRY2A2RUG3 117 aa11.05□□□□□ -0.64
TRIM39-209ENST00000428728 IFNA1P01562 189 aa11.05□□□□□ -0.64
TRIM39-209ENST00000428728 SULT1A2P50226 295 aa11.05□□□□□ -0.64
TRIM39-209ENST00000428728 EIF5AL1Q6IS14 154 aaKnown RBP11.05□□□□□ -0.64
TRIM39-209ENST00000428728 SMIM12Q96EX1 92 aa11.05□□□□□ -0.64
TRIM39-209ENST00000428728 PDE6DO43924 150 aa11.04□□□□□ -0.64
TRIM39-209ENST00000428728 TRGC1P0CF51 173 aa11.04□□□□□ -0.64
TRIM39-209ENST00000428728 REG3AQ06141 175 aa11.04□□□□□ -0.64
TRIM39-209ENST00000428728 KRTAP26-1Q6PEX3 210 aa11.04□□□□□ -0.64
TRIM39-209ENST00000428728 RASL11AQ6T310 242 aa11.04□□□□□ -0.64
TRIM39-209ENST00000428728 LYZL1Q6UWQ5 148 aa11.04□□□□□ -0.64
TRIM39-209ENST00000428728 MED9Q9NWA0 146 aa11.04□□□□□ -0.64
TRIM39-209ENST00000428728 BCL2P10415 239 aa11.03□□□□□ -0.64
TRIM39-209ENST00000428728 TMEM243Q9BU79 118 aa11.03□□□□□ -0.64
TRIM39-209ENST00000428728 F2Z2F3 143 aa11.02□□□□□ -0.65
TRIM39-209ENST00000428728 DGAT2L7PQ6IED9 249 aa11.02□□□□□ -0.65
TRIM39-209ENST00000428728 C20orf203Q8NBC4 194 aa11.02□□□□□ -0.65
TRIM39-209ENST00000428728 DPH3P1Q9H4G8 78 aa11.02□□□□□ -0.65
TRIM39-209ENST00000428728 IGLV4-60A0A075B6I1 120 aa11.01□□□□□ -0.65
TRIM39-209ENST00000428728 NTF3P20783 257 aa11.01□□□□□ -0.65
TRIM39-209ENST00000428728 RPL37AP61513 92 aaKnown RBP11.01□□□□□ -0.65
TRIM39-209ENST00000428728 C9orf163Q8N9P6 203 aa11.01□□□□□ -0.65
TRIM39-209ENST00000428728 GFRA4Q9GZZ7 299 aa11.01□□□□□ -0.65
TRIM39-209ENST00000428728 BIN3Q9NQY0 253 aa11.01□□□□□ -0.65
TRIM39-209ENST00000428728 CTRLP40313 264 aa11□□□□□ -0.65
TRIM39-209ENST00000428728 NIT2Q9NQR4 276 aa11□□□□□ -0.65
TRIM39-209ENST00000428728 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11□□□□□ -0.65
TRIM39-209ENST00000428728 hDV102S1A0JD36 115 aa10.99□□□□□ -0.65
TRIM39-209ENST00000428728 PANO1I0J062 215 aa10.99□□□□□ -0.65
TRIM39-209ENST00000428728 UBE2L6O14933 153 aa10.99□□□□□ -0.65
TRIM39-209ENST00000428728 AMTP48728 403 aa10.99□□□□□ -0.65
TRIM39-209ENST00000428728 NUDT10Q8NFP7 164 aa10.99□□□□□ -0.65
TRIM39-209ENST00000428728 NUDT11Q96G61 164 aa10.99□□□□□ -0.65
TRIM39-209ENST00000428728 PGLYRP4Q96LB8 373 aa10.99□□□□□ -0.65
TRIM39-209ENST00000428728 COTL1Q14019 142 aa10.98□□□□□ -0.65
TRIM39-209ENST00000428728 TWIST1Q15672 202 aa10.98□□□□□ -0.65
TRIM39-209ENST00000428728 SLC51BQ86UW2 128 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms