RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 RAB4AP20338 218 aa8.36□□□□□ -1.07
LINC00539-202ENST00000423575 RPL36AP83881 106 aaKnown RBP8.36□□□□□ -1.07
LINC00539-202ENST00000423575 FAM104BQ5XKR9 115 aa8.36□□□□□ -1.07
LINC00539-202ENST00000423575 RASL11AQ6T310 242 aa8.36□□□□□ -1.07
LINC00539-202ENST00000423575 ZNRF2Q8NHG8 242 aa8.36□□□□□ -1.07
LINC00539-202ENST00000423575 LINC00476Q8WZB0 136 aa8.36□□□□□ -1.07
LINC00539-202ENST00000423575 RPL36ALQ969Q0 106 aaKnown RBP8.36□□□□□ -1.07
LINC00539-202ENST00000423575 GAS8-AS1O95177 125 aa8.35□□□□□ -1.07
LINC00539-202ENST00000423575 UBE2D3P61077 147 aa8.35□□□□□ -1.07
LINC00539-202ENST00000423575 UBE2D2P62837 147 aa8.35□□□□□ -1.07
LINC00539-202ENST00000423575 ESRGQ1W209 222 aa8.35□□□□□ -1.07
LINC00539-202ENST00000423575 LGALS9CQ6DKI2 356 aa8.35□□□□□ -1.07
LINC00539-202ENST00000423575 RPL39LQ96EH5 51 aaKnown RBP8.35□□□□□ -1.07
LINC00539-202ENST00000423575 LINC00588Q9Y4M8 146 aa8.35□□□□□ -1.07
LINC00539-202ENST00000423575 RYR2Q92736 4967 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 TRBV7-3A0A075B6L6 115 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 SMKR1H3BMG3 65 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 NCR2O95944 276 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 MRPL51Q4U2R6 128 aaKnown RBP8.34□□□□□ -1.07
LINC00539-202ENST00000423575 LYPD5Q6UWN5 251 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 SH2D6Q7Z4S9 175 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 CBLN2Q8IUK8 224 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 ATP6V0E2Q8NHE4 81 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 FRZBQ92765 325 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 MRAP2Q96G30 205 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 LYSTQ99698 3801 aa8.34□□□□□ -1.07
LINC00539-202ENST00000423575 TGIF2-C20orf24A0A0A6YYL0 155 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 LCE6AA0A183 80 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 LY6G6CO95867 125 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 RPS10P46783 165 aaKnown RBP8.33□□□□□ -1.08
LINC00539-202ENST00000423575 CCL18P55774 89 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 ELOBQ15370 118 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 TMEM136Q6ZRR5 245 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 UBE2DNLQ8IWF7 75 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 DNAJC30Q96LL9 226 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 YPEL4Q96NS1 127 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 NIT2Q9NQR4 276 aa8.33□□□□□ -1.08
LINC00539-202ENST00000423575 IGHV3-38A0A0C4DH36 116 aa8.32□□□□□ -1.08
LINC00539-202ENST00000423575 TIRAPP58753 221 aa8.32□□□□□ -1.08
LINC00539-202ENST00000423575 GTSF1LQ9H1H1 148 aa8.32□□□□□ -1.08
LINC00539-202ENST00000423575 MRPS16Q9Y3D3 137 aaKnown RBP8.32□□□□□ -1.08
LINC00539-202ENST00000423575 TNFRSF18Q9Y5U5 241 aa8.32□□□□□ -1.08
LINC00539-202ENST00000423575 TRBV24-1A0A075B6N3 115 aa8.31□□□□□ -1.08
LINC00539-202ENST00000423575 D6R8Y8 96 aa8.31□□□□□ -1.08
LINC00539-202ENST00000423575 ATP6V1G1O75348 118 aa8.31□□□□□ -1.08
LINC00539-202ENST00000423575 OR10J3Q5JRS4 329 aa8.31□□□□□ -1.08
LINC00539-202ENST00000423575 NRACQ8N912 160 aa8.31□□□□□ -1.08
LINC00539-202ENST00000423575 SMCO4Q9NRQ5 59 aa8.31□□□□□ -1.08
LINC00539-202ENST00000423575 TRBV6-5A0A0K0K1A5 114 aa8.3□□□□□ -1.08
LINC00539-202ENST00000423575 CKS2P33552 79 aa8.3□□□□□ -1.08
LINC00539-202ENST00000423575 DAZ4Q86SG3 579 aaKnown RBP8.3□□□□□ -1.08
LINC00539-202ENST00000423575 UPK3BQ9BT76 320 aa8.3□□□□□ -1.08
LINC00539-202ENST00000423575 DAZ3Q9NR90 486 aaKnown RBP8.3□□□□□ -1.08
LINC00539-202ENST00000423575 HYDINQ4G0P3 5121 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 RYR3Q15413 4870 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 SDHAF1A6NFY7 115 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 NPYP01303 97 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 HLA-DQA1P01909 254 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 LELP1Q5T871 98 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 WFDC10BQ8IUB3 73 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 GNB1LQ9BYB4 327 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 ST20Q9HBF5 79 aa8.29□□□□□ -1.08
LINC00539-202ENST00000423575 SCO1O75880 301 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 TNFRSF6BO95407 300 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 PPBPP02775 128 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 COX19Q49B96 90 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 NTM-AS1Q6ZSK4 140 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 ORMDL3Q8N138 153 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 DEFB104AQ8WTQ1 72 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 TMEM70Q9BUB7 260 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 DNAH6Q9C0G6 4158 aa8.28□□□□□ -1.08
LINC00539-202ENST00000423575 TRBV6-8A0A0A6YYG3 113 aa8.27□□□□□ -1.09
LINC00539-202ENST00000423575 PPP1R17O96001 155 aa8.27□□□□□ -1.09
LINC00539-202ENST00000423575 APCSP02743 223 aa8.27□□□□□ -1.09
LINC00539-202ENST00000423575 MT-ND6P03923 174 aa8.27□□□□□ -1.09
LINC00539-202ENST00000423575 POLR2KP53803 58 aaKnown RBP8.27□□□□□ -1.09
LINC00539-202ENST00000423575 SUMO2P61956 95 aaKnown RBP8.27□□□□□ -1.09
LINC00539-202ENST00000423575 KIAA1644Q3SXP7 199 aa8.27□□□□□ -1.09
LINC00539-202ENST00000423575 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.27□□□□□ -1.09
LINC00539-202ENST00000423575 PRELID3AQ96N28 172 aa8.27□□□□□ -1.09
LINC00539-202ENST00000423575 PHOX2AO14813 284 aa8.26□□□□□ -1.09
LINC00539-202ENST00000423575 COTL1Q14019 142 aa8.26□□□□□ -1.09
LINC00539-202ENST00000423575 MRPL18Q9H0U6 180 aaKnown RBP8.26□□□□□ -1.09
LINC00539-202ENST00000423575 Q9H8V8 135 aa8.26□□□□□ -1.09
LINC00539-202ENST00000423575 IGLV2-18A0A075B6J9 118 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 TRAV8-6A0A0B4J262 113 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 TRBV27A0A0K0K1C4 114 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 SIVA1O15304 175 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 S100A1P23297 94 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 IQCJQ1A5X6 159 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 TMEM97Q5BJF2 176 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 C20orf78Q9BR46 151 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 KMT2AQ03164 3969 aa8.25□□□□□ -1.09
LINC00539-202ENST00000423575 IGHV1-24A0A0C4DH33 117 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 I3L3M4 83 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 TSHBP01222 138 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 DNAH10OSP0CZ25 163 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 PMCHP20382 165 aa8.24□□□□□ -1.09
LINC00539-202ENST00000423575 RPL32P62910 135 aaKnown RBP8.24□□□□□ -1.09
LINC00539-202ENST00000423575 FABP9Q0Z7S8 132 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms