RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ZNF22P17026 224 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-203ENST00000409050 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-203ENST00000409050 LINC00308Q8TCZ7 52 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 M0QXV9 152 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 C20orf173Q96LM9 149 aa4.62□□□□□ -1.67
SCN1A-203ENST00000409050 PRAC2D3DTV9 90 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 F8W735 103 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-203ENST00000409050 CLPSL2Q6UWE3 100 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 RNF185Q96GF1 192 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 NCR3O14931 201 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 CLEC2BQ92478 149 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 MPDZO75970 2070 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV3-33P01772 117 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 LINC00322Q6ZN03 302 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-203ENST00000409050 FAM110AQ9BQ89 295 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 SPRY2O43597 315 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 REG3AQ06141 175 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 CASC2Q6XLA1 102 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 SNRNP200O75643 2136 aaKnown RBP4.61□□□□□ -1.67
SCN1A-203ENST00000409050 IGLV4-3A0A075B6K6 122 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 COX7CP15954 63 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 APRG1Q8IVJ8 170 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 BRK1Q8WUW1 75 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 RNF183Q96D59 192 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 YPEL4Q96NS1 127 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 CNFNQ9BYD5 112 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 Q9HAA7 133 aa4.61□□□□□ -1.67
SCN1A-203ENST00000409050 MYO7BQ6PIF6 2116 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 TCF20Q9UGU0 1960 aaKnown RBP4.6□□□□□ -1.67
SCN1A-203ENST00000409050 M0R378 163 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 LST1O00453 97 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 NDUFA7O95182 113 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV4-38-2P0DP08 117 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 TDRG1Q3Y452 100 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 FAM19A3Q7Z5A8 133 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV4-30-2A0A087WSY4 118 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 WISP1O95388 367 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 LINC00474Q9P2X8 69 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 ZNF580Q9UK33 172 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 BRI3O95415 125 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV3-30P01768 117 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 IGHV3-30-5P0DP03 117 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 BLCAPP62952 87 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 TRIOBPQ9H2D6 2365 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 SMIM26A0A096LP01 95 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 H0Y9J4 135 aa4.6□□□□□ -1.67
SCN1A-203ENST00000409050 A0A096LPF7 62 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 KLK12Q9UKR0 248 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 MDC1Q14676 2089 aaKnown RBP4.59□□□□□ -1.67
SCN1A-203ENST00000409050 DENND4AQ7Z401 1863 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 KMT2EQ8IZD2 1858 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 PRB4P10163 310 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-203ENST00000409050 LINC01561Q8N1V8 128 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 M0QY20 66 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 HILS1P60008 231 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 CD164L2Q6UWJ8 174 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 Q6YL49 198 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 MGAMO43451 1857 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 ADORA2A-AS1P86434 159 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 SEM1Q6ZVN7 128 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 C20orf197Q8N268 126 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 PRORYQ9H606 182 aa4.59□□□□□ -1.67
SCN1A-203ENST00000409050 TRBV6-8A0A0A6YYG3 113 aa4.59□□□□□ -1.68
SCN1A-203ENST00000409050 CHCHD10Q8WYQ3 142 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-203ENST00000409050 TICRRQ7Z2Z1 1910 aa4.59□□□□□ -1.68
SCN1A-203ENST00000409050 FANCMQ8IYD8 2048 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 LY6LH3BQJ8 138 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 PTH2Q96A98 100 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 HEATR1Q9H583 2144 aaKnown RBP4.58□□□□□ -1.68
SCN1A-203ENST00000409050 IGKV4-1P06312 121 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 UBE2D2P62837 147 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 DEFB114Q30KQ6 69 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 CFAP126Q5VTH2 177 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 ZFAND3Q9H8U3 227 aa4.58□□□□□ -1.68
SCN1A-203ENST00000409050 TP53BP1Q12888 1972 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-203ENST00000409050 BCE1O60756 84 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 IGLV10-54A0A075B6I4 117 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 TRAV7A0A075B6U4 112 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 TRAV23DV6A0A075B6W5 121 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 IGHV4-28A0A0C4DH34 117 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 LMO4P61968 165 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 Q8IZM0 81 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 C11orf45Q8TAV5 145 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 RITA1Q96K30 269 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 SDK2Q58EX2 2172 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 WDR81Q562E7 1941 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 IGLV4-69A0A075B6H9 119 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 SERP1Q9Y6X1 66 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 GVINP1Q7Z2Y8 2422 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 TRIAP1O43715 76 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 SYCNQ0VAF6 134 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 LELP1Q5T871 98 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 ASPHD1Q5U4P2 390 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 COX8CQ7Z4L0 72 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 ATRXP46100 2492 aa4.57□□□□□ -1.68
SCN1A-203ENST00000409050 INTS1Q8N201 2190 aaKnown RBP4.57□□□□□ -1.68
SCN1A-203ENST00000409050 EML6Q6ZMW3 1958 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 CDKN2A-AS1Q9UH64 79 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 ZNF318Q5VUA4 2279 aa4.56□□□□□ -1.68
SCN1A-203ENST00000409050 KLLNB2CW77 178 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms