RNA–Protein interactions for RNA: ENST00000394082.8

SNRPA1-202, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-202ENST00000394082 FAT3Q8TDW7 4589 aa11.36□□□□□ -0.59
SNRPA1-202ENST00000394082 SNAI2O43623 268 aa11.35□□□□□ -0.59
SNRPA1-202ENST00000394082 CRPP02741 224 aa11.35□□□□□ -0.59
SNRPA1-202ENST00000394082 MIAQ16674 131 aa11.35□□□□□ -0.59
SNRPA1-202ENST00000394082 DGAT2L7PQ6IED9 249 aa11.35□□□□□ -0.59
SNRPA1-202ENST00000394082 EIF5AL1Q6IS14 154 aaKnown RBP11.35□□□□□ -0.59
SNRPA1-202ENST00000394082 MLST8Q9BVC4 326 aa11.35□□□□□ -0.59
SNRPA1-202ENST00000394082 HMCN2Q8NDA2 5059 aa11.34□□□□□ -0.59
SNRPA1-202ENST00000394082 OR5AL1P0C617 328 aa11.34□□□□□ -0.59
SNRPA1-202ENST00000394082 MPV17L2Q567V2 206 aa11.34□□□□□ -0.59
SNRPA1-202ENST00000394082 SFT2D1Q8WV19 159 aa11.34□□□□□ -0.59
SNRPA1-202ENST00000394082 VAX2Q9UIW0 290 aa11.34□□□□□ -0.59
SNRPA1-202ENST00000394082 ZNF56Q15929 161 aa11.33□□□□□ -0.6
SNRPA1-202ENST00000394082 C15orf54Q8N8G6 183 aa11.33□□□□□ -0.6
SNRPA1-202ENST00000394082 OR10AG1Q8NH19 301 aa11.33□□□□□ -0.6
SNRPA1-202ENST00000394082 PRR34Q9NV39 138 aa11.33□□□□□ -0.6
SNRPA1-202ENST00000394082 ANGP03950 147 aaKnown RBP11.32□□□□□ -0.6
SNRPA1-202ENST00000394082 MBD3L1Q8WWY6 194 aa11.32□□□□□ -0.6
SNRPA1-202ENST00000394082 A0A1B0GV50 99 aa11.31□□□□□ -0.6
SNRPA1-202ENST00000394082 USP17L23D6RBM5 183 aa11.31□□□□□ -0.6
SNRPA1-202ENST00000394082 PAGE4O60829 102 aa11.31□□□□□ -0.6
SNRPA1-202ENST00000394082 H2AFB1P0C5Y9 115 aa11.31□□□□□ -0.6
SNRPA1-202ENST00000394082 SLC51BQ86UW2 128 aa11.31□□□□□ -0.6
SNRPA1-202ENST00000394082 C9orf163Q8N9P6 203 aa11.31□□□□□ -0.6
SNRPA1-202ENST00000394082 CHCHD5Q9BSY4 110 aa11.31□□□□□ -0.6
SNRPA1-202ENST00000394082 RAB5CP51148 216 aa11.3□□□□□ -0.6
SNRPA1-202ENST00000394082 SPANXN1Q5VSR9 72 aa11.3□□□□□ -0.6
SNRPA1-202ENST00000394082 BAGE2Q86Y30 109 aa11.3□□□□□ -0.6
SNRPA1-202ENST00000394082 KIF25-AS1Q9Y6Z4 181 aa11.3□□□□□ -0.6
SNRPA1-202ENST00000394082 PKHD1L1Q86WI1 4243 aa11.29□□□□□ -0.6
SNRPA1-202ENST00000394082 RPL19P84098 196 aaKnown RBP11.29□□□□□ -0.6
SNRPA1-202ENST00000394082 NTM-AS1Q6ZSK4 140 aa11.29□□□□□ -0.6
SNRPA1-202ENST00000394082 TEX46H3BTG2 121 aa11.28□□□□□ -0.6
SNRPA1-202ENST00000394082 PRSS1P07477 247 aa11.28□□□□□ -0.6
SNRPA1-202ENST00000394082 RPL37AP61513 92 aaKnown RBP11.28□□□□□ -0.6
SNRPA1-202ENST00000394082 KRTAP26-1Q6PEX3 210 aa11.28□□□□□ -0.6
SNRPA1-202ENST00000394082 CLRN3Q8NCR9 226 aa11.28□□□□□ -0.6
SNRPA1-202ENST00000394082 TRBV25-1A0A075B6N4 114 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 SCO2A0A1W2PP80 73 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 F5H697 171 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 HLA-DQA1P01909 254 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 RBX1P62877 108 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 IQCJQ1A5X6 159 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 C9orf62Q8N4C0 152 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 AP1S3Q96PC3 154 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 DERL1Q9BUN8 251 aa11.27□□□□□ -0.61
SNRPA1-202ENST00000394082 A0A1B0GVG6 124 aa11.26□□□□□ -0.61
SNRPA1-202ENST00000394082 SMIM17P0DL12 118 aa11.26□□□□□ -0.61
SNRPA1-202ENST00000394082 SULT1A2P50226 295 aa11.25□□□□□ -0.61
SNRPA1-202ENST00000394082 SDIM1Q6ZPB5 146 aa11.25□□□□□ -0.61
SNRPA1-202ENST00000394082 LINC00269Q8N2A0 174 aa11.25□□□□□ -0.61
SNRPA1-202ENST00000394082 MANBALQ9NQG1 85 aa11.25□□□□□ -0.61
SNRPA1-202ENST00000394082 H7C1H1 209 aa11.24□□□□□ -0.61
SNRPA1-202ENST00000394082 CNBPP62633 177 aaKnown RBP11.24□□□□□ -0.61
SNRPA1-202ENST00000394082 GNG13Q9P2W3 67 aa11.24□□□□□ -0.61
SNRPA1-202ENST00000394082 TRAV8-4A0A0B4J246 113 aa11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 TRAV1-1A0A0B4J248 108 aa11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 IGHV1-24A0A0C4DH33 117 aa11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 A0A1B0GUV1 79 aa11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 M0QY20 66 aa11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 P01737 135 aa11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 CIRBPQ14011 172 aaKnown RBP11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 DAZAP1Q96EP5 407 aaKnown RBP11.23□□□□□ -0.61
SNRPA1-202ENST00000394082 MUC21A0A0G2JKD1 596 aa11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 MUC21A0A140T8X8 626 aa11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 IGLC6P0CF74 106 aa11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 GZMBP10144 247 aa11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 RPL35P42766 123 aaKnown RBP11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 REG3AQ06141 175 aa11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 GAGE6Q13070 117 aa11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 C11orf52Q96A22 123 aa11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.22□□□□□ -0.61
SNRPA1-202ENST00000394082 IFNA1P01562 189 aa11.21□□□□□ -0.61
SNRPA1-202ENST00000394082 RPS20P60866 119 aaKnown RBP11.21□□□□□ -0.61
SNRPA1-202ENST00000394082 SMIM12Q96EX1 92 aa11.21□□□□□ -0.61
SNRPA1-202ENST00000394082 PLA2G2DQ9UNK4 145 aa11.21□□□□□ -0.61
SNRPA1-202ENST00000394082 UBR4Q5T4S7 5183 aa11.2□□□□□ -0.62
SNRPA1-202ENST00000394082 CACNG7P62955 275 aa11.2□□□□□ -0.62
SNRPA1-202ENST00000394082 CCL20P78556 96 aa11.2□□□□□ -0.62
SNRPA1-202ENST00000394082 PGLYRP4Q96LB8 373 aa11.2□□□□□ -0.62
SNRPA1-202ENST00000394082 F2Z2F3 143 aa11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 HNRNPA3P51991 378 aaKnown RBP11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 NKX2-5P52952 324 aaPredicted RBP11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 CLPSL2Q6UWE3 100 aa11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 Q6ZRU5 148 aa11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 FER1L6-AS1Q8NA97 138 aa11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 C20orf203Q8NBC4 194 aa11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 RNF185Q96GF1 192 aa11.19□□□□□ -0.62
SNRPA1-202ENST00000394082 C19orf71A6NCJ1 209 aa11.18□□□□□ -0.62
SNRPA1-202ENST00000394082 PANO1I0J062 215 aa11.18□□□□□ -0.62
SNRPA1-202ENST00000394082 SSTP61278 116 aa11.18□□□□□ -0.62
SNRPA1-202ENST00000394082 ALKAL2Q6UX46 152 aa11.18□□□□□ -0.62
SNRPA1-202ENST00000394082 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.17□□□□□ -0.62
SNRPA1-202ENST00000394082 XKRY2A2RUG3 117 aa11.17□□□□□ -0.62
SNRPA1-202ENST00000394082 SUMO4Q6EEV6 95 aa11.17□□□□□ -0.62
SNRPA1-202ENST00000394082 RASL11AQ6T310 242 aa11.17□□□□□ -0.62
SNRPA1-202ENST00000394082 TMEM243Q9BU79 118 aa11.17□□□□□ -0.62
SNRPA1-202ENST00000394082 TAGLN2P37802 199 aaKnown RBP11.16□□□□□ -0.62
SNRPA1-202ENST00000394082 BLOC1S1P78537 153 aa11.16□□□□□ -0.62
SNRPA1-202ENST00000394082 MEF2BQ02080 365 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms