RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 IGHV3-73A0A0B4J1V6 119 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 ATXN8Q156A1 80 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 EEF1AKMT3Q96AZ1 226 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 CLPSL1A2RUU4 121 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 SAA4P35542 130 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 CLEC2BQ92478 149 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 TRAV8-3A0A0A6YYJ7 113 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 A0A0J9YXV3 536 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 H3BMM0 161 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 IGHV3-33P01772 117 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 UBE2WQ96B02 151 aa10.41□□□□□ -0.74
SDC1-202ENST00000381150 TMEM95Q3KNT9 176 aa10.4□□□□□ -0.74
SDC1-202ENST00000381150 UNQ9165/PRO28630Q6UXU0 137 aa10.4□□□□□ -0.74
SDC1-202ENST00000381150 DAND5Q8N907 189 aa10.4□□□□□ -0.74
SDC1-202ENST00000381150 ABCA2Q9BZC7 2435 aa10.4□□□□□ -0.75
SDC1-202ENST00000381150 TRBV12-3P01733 135 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 PAPPA-AS1Q5QFB9 102 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 SUMO4Q6EEV6 95 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 PSMG3-AS1Q96PY0 264 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 TRAV12-2A0A075B6T6 113 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 FAM110DQ8TAY7 271 aaPredicted RBP10.39□□□□□ -0.75
SDC1-202ENST00000381150 A8MZ25 164 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 LINC01619G3V211 115 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 C9orf47Q6ZRZ4 202 aa10.39□□□□□ -0.75
SDC1-202ENST00000381150 CENPVL3A0A0U1RRI6 287 aa10.38□□□□□ -0.75
SDC1-202ENST00000381150 VCYO14598 125 aa10.38□□□□□ -0.75
SDC1-202ENST00000381150 CEMP1Q6PRD7 247 aaPredicted RBP10.38□□□□□ -0.75
SDC1-202ENST00000381150 ZFAND2AQ8N6M9 145 aa10.38□□□□□ -0.75
SDC1-202ENST00000381150 CITED1Q99966 193 aa10.38□□□□□ -0.75
SDC1-202ENST00000381150 USP9XQ93008 2570 aaPredicted RBP10.38□□□□□ -0.75
SDC1-202ENST00000381150 TRIAP1O43715 76 aa10.38□□□□□ -0.75
SDC1-202ENST00000381150 CFAP161Q6P656 301 aa10.38□□□□□ -0.75
SDC1-202ENST00000381150 CFAP46Q8IYW2 2715 aa10.37□□□□□ -0.75
SDC1-202ENST00000381150 NPFFO15130 113 aa10.37□□□□□ -0.75
SDC1-202ENST00000381150 LY6EQ16553 131 aa10.37□□□□□ -0.75
SDC1-202ENST00000381150 GPHB5Q86YW7 130 aa10.37□□□□□ -0.75
SDC1-202ENST00000381150 ZNF625Q96I27 306 aaPredicted RBP10.37□□□□□ -0.75
SDC1-202ENST00000381150 PKD1L2Q7Z442 2459 aa10.37□□□□□ -0.75
SDC1-202ENST00000381150 RNASE3P12724 160 aaKnown RBP10.36□□□□□ -0.75
SDC1-202ENST00000381150 COX6CP09669 75 aa10.36□□□□□ -0.75
SDC1-202ENST00000381150 CACNA1AO00555 2505 aa10.36□□□□□ -0.75
SDC1-202ENST00000381150 JMJD1CQ15652 2540 aa10.36□□□□□ -0.75
SDC1-202ENST00000381150 IGIPA6NJ69 53 aa10.36□□□□□ -0.75
SDC1-202ENST00000381150 RS1O15537 224 aa10.35□□□□□ -0.75
SDC1-202ENST00000381150 ZNF876PQ49A33 203 aa10.35□□□□□ -0.75
SDC1-202ENST00000381150 C9orf139Q6ZV77 190 aa10.35□□□□□ -0.75
SDC1-202ENST00000381150 PPP1R17O96001 155 aa10.35□□□□□ -0.75
SDC1-202ENST00000381150 PF4V1P10720 104 aa10.35□□□□□ -0.75
SDC1-202ENST00000381150 C5orf56Q8N8D9 126 aa10.35□□□□□ -0.75
SDC1-202ENST00000381150 TMEM263Q8WUH6 116 aaKnown RBP10.35□□□□□ -0.75
SDC1-202ENST00000381150 EIF4EBP3O60516 100 aaPredicted RBP10.34□□□□□ -0.75
SDC1-202ENST00000381150 DUX5Q96PT3 197 aa10.34□□□□□ -0.75
SDC1-202ENST00000381150 ODF3Q96PU9 254 aa10.34□□□□□ -0.75
SDC1-202ENST00000381150 IGHV4-4A0A075B6R2 117 aa10.34□□□□□ -0.75
SDC1-202ENST00000381150 RNF223E7ERA6 249 aa10.34□□□□□ -0.75
SDC1-202ENST00000381150 C19orf54Q5BKX5 351 aa10.34□□□□□ -0.75
SDC1-202ENST00000381150 M0R2P5 195 aa10.33□□□□□ -0.76
SDC1-202ENST00000381150 ZNF22P17026 224 aaPredicted RBP10.33□□□□□ -0.76
SDC1-202ENST00000381150 RPL13AP40429 203 aaKnown RBP10.33□□□□□ -0.76
SDC1-202ENST00000381150 PIEZO1Q92508 2521 aa10.33□□□□□ -0.76
SDC1-202ENST00000381150 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.33□□□□□ -0.76
SDC1-202ENST00000381150 CD28P10747 220 aa10.33□□□□□ -0.76
SDC1-202ENST00000381150 FAM208BQ5VWN6 2430 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 MUC4Q99102 2169 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 IGHV4-61A0A0C4DH41 118 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 TRBV10-2A0A0K0K1G8 114 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 FAM236AA0A1B0GUQ0 79 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 FAM236BA0A1B0GV22 79 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 MRPL23Q16540 153 aaKnown RBP10.32□□□□□ -0.76
SDC1-202ENST00000381150 BRD3OSQ6XYD6 125 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 TMEM141Q96I45 108 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 TIMM21Q9BVV7 248 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 CELSR2Q9HCU4 2923 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 KNCNA6PVL3 124 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 SBSPONQ8IVN8 264 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 MDFICQ9P1T7 246 aa10.32□□□□□ -0.76
SDC1-202ENST00000381150 EDN2P20800 178 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 A0A0J9YXY3 114 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 OVOL1O14753 267 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 ICOSQ9Y6W8 199 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 PRRC2AP48634 2157 aaKnown RBP10.31□□□□□ -0.76
SDC1-202ENST00000381150 P0DMU3 169 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 FAM231AP0DMU4 169 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 FAM231CP0DMU5 169 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 RHPN1-AS1Q9BWJ2 59 aa10.31□□□□□ -0.76
SDC1-202ENST00000381150 TRGV11A0A075B6L2 103 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 TRBV7-1A0A0A6YYK4 115 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 IGHV1-69DA0A0B4J2H0 117 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 LEPROTO15243 131 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 IGHV1-69P01742 117 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 C10orf105Q8TEF2 133 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 TRAV41A0A0B4J266 112 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 H7C423 109 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 LGALS9O00182 355 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 IGHV3-30-3P0DP02 117 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 NDUFA12Q9UI09 145 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 ZANQ9Y493 2812 aa10.3□□□□□ -0.76
SDC1-202ENST00000381150 FLNCQ14315 2725 aa10.29□□□□□ -0.76
SDC1-202ENST00000381150 POLR2KP53803 58 aaKnown RBP10.29□□□□□ -0.76
SDC1-202ENST00000381150 U3KQE9 123 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms