RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.8□□□□□ -1.32
LIG3-202ENST00000378526 H3BUX3 64 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 PRR19A6NJB7 356 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 IGHV7-4-1A0A0J9YVY3 117 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 LMO1P25800 156 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 PTPRSQ13332 1948 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 EIF4EBP2Q13542 120 aaPredicted RBP6.8□□□□□ -1.32
LIG3-202ENST00000378526 C2orf70A6NJV1 201 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 TP73-AS1Q9UF72 201 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 C8orf87E5RJ46 101 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 CCKP06307 115 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 C1orf53Q5VUE5 145 aa6.8□□□□□ -1.32
LIG3-202ENST00000378526 A0A087WV48 116 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 TRBV6-1A0A0K0K1D8 114 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 TMEM223A0PJW6 202 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 UFSP1Q6NVU6 142 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 IGKV1OR2-108A0A075B7D4 117 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 MLANAQ16655 118 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 B4DSR2 109 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 NFE4Q86UQ8 179 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 C20orf204Q6ZNR8 217 aa6.79□□□□□ -1.32
LIG3-202ENST00000378526 TRBV7-6A0A0J9YX20 115 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 LST1O00453 97 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 LINC01565O15544 149 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 IGHV3-33P01772 117 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 IGF1P05019 195 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 LINC00311Q8N616 119 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 NOP10Q9NPE3 64 aaKnown RBP6.78□□□□□ -1.32
LIG3-202ENST00000378526 H7C423 109 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 ESRGQ1W209 222 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 COL5A1P20908 1838 aaPredicted RBP6.78□□□□□ -1.32
LIG3-202ENST00000378526 IGLV3-9A0A075B6K5 115 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 A8MZ25 164 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 A0A0G2JNJ9 132 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 ZNF672Q499Z4 452 aaPredicted RBP6.78□□□□□ -1.32
LIG3-202ENST00000378526 Q9UFV3 132 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 GNRH2O43555 120 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 SAA4P35542 130 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 LY6DQ14210 128 aa6.78□□□□□ -1.32
LIG3-202ENST00000378526 LRP4O75096 1905 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 PLAC8L1A1L4L8 177 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 SHISA2Q6UWI4 295 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 ZMAT4Q9H898 229 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 IGKV1D-17A0A075B6S4 117 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 IBA57-AS1B1ANH7 110 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 ATP6V0E1O15342 81 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 RPL39P62891 51 aaKnown RBP6.77□□□□□ -1.33
LIG3-202ENST00000378526 GATA4P43694 442 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 UBE2D1P51668 147 aa6.77□□□□□ -1.33
LIG3-202ENST00000378526 SCXQ7RTU7 201 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 FNDC1Q4ZHG4 1894 aaPredicted RBP6.76□□□□□ -1.33
LIG3-202ENST00000378526 SHANK3Q9BYB0 1731 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 Q8TCH9 128 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 IGHV4-30-2A0A087WSY4 118 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 C14orf177Q52M58 125 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 C9orf106Q8NAJ2 232 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 UBE2D3P61077 147 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 GYPEP15421 78 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 Q6ZQT7 251 aa6.76□□□□□ -1.33
LIG3-202ENST00000378526 TMEM263Q8WUH6 116 aaKnown RBP6.76□□□□□ -1.33
LIG3-202ENST00000378526 FAM30AQ9NZY2 134 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 TRBV7-7A0A0K0K1E9 115 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 DEFB123Q8N688 67 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 WT1P19544 449 aaPredicted RBP6.75□□□□□ -1.33
LIG3-202ENST00000378526 hDV103S1A0JD37 113 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 DEFB121Q5J5C9 76 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.75□□□□□ -1.33
LIG3-202ENST00000378526 IGLV3-12A0A075B6K2 115 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 CD164Q04900 197 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 WT1-ASQ06250 92 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 C1orf158Q8N1D5 194 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 F8WDY8 70 aa6.75□□□□□ -1.33
LIG3-202ENST00000378526 PPDPFQ9H3Y8 114 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 DHRS4-AS1Q9P1J3 65 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 IGKV1-6A0A0C4DH72 117 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 A0A0J9YWU9 116 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 TRBV10-1A0A0K0K1A3 114 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 LINC01356Q8N9X3 169 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 SP7Q8TDD2 431 aaPredicted RBP6.74□□□□□ -1.33
LIG3-202ENST00000378526 SAP25Q8TEE9 199 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 LINC00308Q8TCZ7 52 aa6.74□□□□□ -1.33
LIG3-202ENST00000378526 A0A0J9YY99 117 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 RPL28P46779 137 aaKnown RBP6.73□□□□□ -1.33
LIG3-202ENST00000378526 PLA2G2AP14555 144 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 EIF4EBP1Q13541 118 aaPredicted RBP6.73□□□□□ -1.33
LIG3-202ENST00000378526 LINC00269Q8N2A0 174 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 E9PLN8 166 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 GP9P14770 177 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 NEXN-AS1Q8NBZ9 246 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 MUC7Q8TAX7 377 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 RPP25Q9BUL9 199 aaKnown RBP6.73□□□□□ -1.33
LIG3-202ENST00000378526 LRCOL1A6NCL2 159 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 IGHV3-30P01768 117 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 IGHV3-30-5P0DP03 117 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 Q8N6K4 173 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 TTTY13Q9BZ97 58 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 IGLV10-54A0A075B6I4 117 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 C3orf84H3BNL1 204 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 CCL18P55774 89 aa6.73□□□□□ -1.33
LIG3-202ENST00000378526 A0A1B0GXF2 115 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms