RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 SLURP1P55000 103 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 DIAPH2-AS1Q14236 149 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 APRG1Q8IVJ8 170 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 CDPF1Q6NVV7 123 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 FAM110AQ9BQ89 295 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 PIEZO1Q92508 2521 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 TRBV7-3A0A075B6L6 115 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 TOMM6Q96B49 74 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 ZFHX2Q9C0A1 2572 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-208ENST00000367256 CCL18P55774 89 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 B9D2Q9BPU9 175 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 TLN1Q9Y490 2541 aaKnown RBP5.69□□□□□ -1.5
SYNE1-208ENST00000367256 GATA1P15976 413 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-208ENST00000367256 C11orf86A6NJI1 115 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 LECT2O14960 151 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 AGPAT4-IT1Q9H0P7 198 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 TLN2Q9Y4G6 2542 aa5.69□□□□□ -1.5
SYNE1-208ENST00000367256 DIRC1Q969H9 104 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 RSPO1Q2MKA7 263 aaPredicted RBP5.68□□□□□ -1.5
SYNE1-208ENST00000367256 C9orf66Q5T8R8 295 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 TMEM256-PLSCR3K7ERE1 68 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 FXYD2P54710 66 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 RPL39P62891 51 aaKnown RBP5.68□□□□□ -1.5
SYNE1-208ENST00000367256 KRTAP27-1Q3LI81 207 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 C16orf54Q6UWD8 224 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 PCSK5Q92824 1860 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 ODF1Q14990 250 aa5.68□□□□□ -1.5
SYNE1-208ENST00000367256 SPART-AS1P0CW21 52 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 WFDC2Q14508 124 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 NPBQ8NG41 125 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 NDUFV3P56181 108 aaKnown RBP5.67□□□□□ -1.5
SYNE1-208ENST00000367256 Q8N1Y9 231 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 IGHV4-59P01825 116 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 K7ERS5 55 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 CASC2Q6XLA1 102 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 Q6ZUT4 128 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 K7ENP7 123 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 UQCRQO14949 82 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 FAM167A-AS1Q96KT0 104 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 NAV2Q8IVL1 2488 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 LRP4O75096 1905 aa5.67□□□□□ -1.5
SYNE1-208ENST00000367256 WI2-2373I1.2A0A1W2PRP0 233 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 ZNF503-AS2A6NEH8 195 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 PRR15LQ9BU68 103 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 SPRY2O43597 315 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 COX7BP24311 80 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 TM2D2Q9BX73 214 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 A0A0J9YXV3 536 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 LINC00173Q6ZV60 143 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 MPLKIPQ8TAP9 179 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 FGF23Q9GZV9 251 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-208ENST00000367256 TDRG1Q3Y452 100 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 HHLA3Q9XRX5 114 aa5.66□□□□□ -1.5
SYNE1-208ENST00000367256 CPAMD8Q8IZJ3 1885 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 USP17L23D6RBM5 183 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 FANCD2OSQ96PS1 177 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 TRAV23DV6A0A075B6W5 121 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 TRAV26-1A0A087WT03 109 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 IGKV2D-26A0A0A0MRZ7 120 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 IGKV1-17P01599 117 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 PROK2Q9HC23 129 aa5.65□□□□□ -1.5
SYNE1-208ENST00000367256 SETD2Q9BYW2 2564 aaPredicted RBP5.65□□□□□ -1.5
SYNE1-208ENST00000367256 IGHV1-58A0A0C4DH39 117 aa5.65□□□□□ -1.51
SYNE1-208ENST00000367256 IMUPQ9GZP8 106 aa5.65□□□□□ -1.51
SYNE1-208ENST00000367256 I3L2K1 104 aa5.65□□□□□ -1.51
SYNE1-208ENST00000367256 NDUFC1O43677 76 aa5.65□□□□□ -1.51
SYNE1-208ENST00000367256 NDUFA11Q86Y39 141 aa5.65□□□□□ -1.51
SYNE1-208ENST00000367256 LYPD6Q86Y78 171 aa5.65□□□□□ -1.51
SYNE1-208ENST00000367256 COL5A1P20908 1838 aaPredicted RBP5.65□□□□□ -1.51
SYNE1-208ENST00000367256 NUPR1O60356 82 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 C4orf3Q8WVX3 66 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 A0A1B0GXF2 115 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 SPAG11BQ08648 103 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 GTSF1Q8WW33 167 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 TEX49A0A1B0GTD5 131 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 K7EIM0 57 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 NFE4Q86UQ8 179 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 IGLV11-55A0A075B6I3 123 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 FAM236DA0A1B0GTK5 79 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 TEX22C9J3V5 150 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 FAM236CP0DP71 79 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 DEFB112Q30KQ8 113 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 A0A0J9YXY3 114 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 MLST8Q9BVC4 326 aa5.64□□□□□ -1.51
SYNE1-208ENST00000367256 MIAQ16674 131 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 TCL1BO95988 128 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 FAM215AQ9Y5M1 114 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 C19orf71A6NCJ1 209 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 DEFB135Q30KP9 77 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 SDIM1Q6ZPB5 146 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 C14orf177Q52M58 125 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 C2orf70A6NJV1 201 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 C3orf22Q8N5N4 141 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 A0A0U1RQV1 116 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 PRSS33Q8NF86 280 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 KIR2DL5BQ8NHK3 375 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 C11orf1Q9H5F2 150 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 RITA1Q96K30 269 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 ADAMTS20P59510 1910 aa5.63□□□□□ -1.51
SYNE1-208ENST00000367256 K7EMT4 169 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms