RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 SPANXN1Q5VSR9 72 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 KCNRGQ8N5I3 272 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 CHCHD5Q9BSY4 110 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 F5H697 171 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 PFDN1O60925 122 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 IGLV2-8P01709 118 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 ZNF345Q14585 488 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 NTM-AS1Q6ZSK4 140 aa9.38□□□□□ -0.91
PRPF40A-201ENST00000354363 UMAD1C9J7I0 102 aa9.37□□□□□ -0.91
PRPF40A-201ENST00000354363 USP17L23D6RBM5 183 aa9.37□□□□□ -0.91
PRPF40A-201ENST00000354363 PKIAP61925 76 aa9.37□□□□□ -0.91
PRPF40A-201ENST00000354363 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.37□□□□□ -0.91
PRPF40A-201ENST00000354363 VAX2Q9UIW0 290 aa9.37□□□□□ -0.91
PRPF40A-201ENST00000354363 KIF25-AS1Q9Y6Z4 181 aa9.37□□□□□ -0.91
PRPF40A-201ENST00000354363 HLA-DQA1P01909 254 aa9.36□□□□□ -0.91
PRPF40A-201ENST00000354363 SSTP61278 116 aa9.36□□□□□ -0.91
PRPF40A-201ENST00000354363 MIAQ16674 131 aa9.36□□□□□ -0.91
PRPF40A-201ENST00000354363 RGS21Q2M5E4 152 aa9.36□□□□□ -0.91
PRPF40A-201ENST00000354363 TMEM97Q5BJF2 176 aa9.36□□□□□ -0.91
PRPF40A-201ENST00000354363 TMUB2Q71RG4 321 aa9.35□□□□□ -0.91
PRPF40A-201ENST00000354363 PRSS1P07477 247 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 RBX1P62877 108 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 DERL1Q9BUN8 251 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 PRR34Q9NV39 138 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 H2AFB1P0C5Y9 115 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 SMIM17P0DL12 118 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 RPL35P42766 123 aaKnown RBP9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 GAGE6Q13070 117 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 KRTAP26-1Q6PEX3 210 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 CLPSL2Q6UWE3 100 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 AP1S3Q96PC3 154 aa9.34□□□□□ -0.91
PRPF40A-201ENST00000354363 A0A0D9SG52 128 aa9.33□□□□□ -0.92
PRPF40A-201ENST00000354363 HMSDA8MTL9 139 aa9.33□□□□□ -0.92
PRPF40A-201ENST00000354363 BCL2L11O43521 198 aa9.33□□□□□ -0.92
PRPF40A-201ENST00000354363 OXTP01178 125 aa9.33□□□□□ -0.92
PRPF40A-201ENST00000354363 DGAT2L7PQ6IED9 249 aa9.33□□□□□ -0.92
PRPF40A-201ENST00000354363 LINC00269Q8N2A0 174 aa9.33□□□□□ -0.92
PRPF40A-201ENST00000354363 TRBV25-1A0A075B6N4 114 aa9.32□□□□□ -0.92
PRPF40A-201ENST00000354363 KANTRA0A1W2PQU2 76 aa9.32□□□□□ -0.92
PRPF40A-201ENST00000354363 C9orf163Q8N9P6 203 aa9.32□□□□□ -0.92
PRPF40A-201ENST00000354363 GZMBP10144 247 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 RPL37AP61513 92 aaKnown RBP9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 IQCJQ1A5X6 159 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 C11orf52Q96A22 123 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 IGHV1-24A0A0C4DH33 117 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 M0QY20 66 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 MGPP08493 103 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 IGLC6P0CF74 106 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 CCL20P78556 96 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 SERTAD4-AS1Q5TG53 156 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 FER1L6-AS1Q8NA97 138 aa9.31□□□□□ -0.92
PRPF40A-201ENST00000354363 HMCN2Q8NDA2 5059 aa9.3□□□□□ -0.92
PRPF40A-201ENST00000354363 EIF5AP63241 154 aaKnown RBP9.3□□□□□ -0.92
PRPF40A-201ENST00000354363 CENPWQ5EE01 88 aa9.3□□□□□ -0.92
PRPF40A-201ENST00000354363 SUMO4Q6EEV6 95 aa9.3□□□□□ -0.92
PRPF40A-201ENST00000354363 MANBALQ9NQG1 85 aa9.3□□□□□ -0.92
PRPF40A-201ENST00000354363 GNG13Q9P2W3 67 aa9.3□□□□□ -0.92
PRPF40A-201ENST00000354363 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.3□□□□□ -0.92
PRPF40A-201ENST00000354363 HNRNPA3P51991 378 aaKnown RBP9.29□□□□□ -0.92
PRPF40A-201ENST00000354363 REG3AQ06141 175 aa9.29□□□□□ -0.92
PRPF40A-201ENST00000354363 OR2D3Q8NGH3 330 aa9.29□□□□□ -0.92
PRPF40A-201ENST00000354363 TPPP3Q9BW30 176 aa9.29□□□□□ -0.92
PRPF40A-201ENST00000354363 IGLV10-54A0A075B6I4 117 aa9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 C19orf71A6NCJ1 209 aa9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 H7C1H1 209 aa9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 PANO1I0J062 215 aa9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 RPS20P60866 119 aaKnown RBP9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 CACNG7P62955 275 aa9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 C20orf203Q8NBC4 194 aa9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 CLRN3Q8NCR9 226 aa9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 DAZAP1Q96EP5 407 aaKnown RBP9.28□□□□□ -0.92
PRPF40A-201ENST00000354363 TRAV1-1A0A0B4J248 108 aa9.27□□□□□ -0.92
PRPF40A-201ENST00000354363 NKX2-5P52952 324 aaPredicted RBP9.27□□□□□ -0.92
PRPF40A-201ENST00000354363 SDIM1Q6ZPB5 146 aa9.27□□□□□ -0.92
PRPF40A-201ENST00000354363 RAB19A4D1S5 217 aa9.27□□□□□ -0.93
PRPF40A-201ENST00000354363 TMEM243Q9BU79 118 aa9.27□□□□□ -0.93
PRPF40A-201ENST00000354363 IGLV4-60A0A075B6I1 120 aa9.26□□□□□ -0.93
PRPF40A-201ENST00000354363 A0A1B0GUV1 79 aa9.26□□□□□ -0.93
PRPF40A-201ENST00000354363 CNBPP62633 177 aaKnown RBP9.26□□□□□ -0.93
PRPF40A-201ENST00000354363 RASL11AQ6T310 242 aa9.26□□□□□ -0.93
PRPF40A-201ENST00000354363 GFRA4Q9GZZ7 299 aa9.26□□□□□ -0.93
PRPF40A-201ENST00000354363 TRAV8-4A0A0B4J246 113 aa9.25□□□□□ -0.93
PRPF40A-201ENST00000354363 P01737 135 aa9.25□□□□□ -0.93
PRPF40A-201ENST00000354363 GNG4P50150 75 aa9.25□□□□□ -0.93
PRPF40A-201ENST00000354363 SMIM12Q96EX1 92 aa9.25□□□□□ -0.93
PRPF40A-201ENST00000354363 hDV102S1A0JD36 115 aa9.24□□□□□ -0.93
PRPF40A-201ENST00000354363 F2Z2F3 143 aa9.24□□□□□ -0.93
PRPF40A-201ENST00000354363 TRGC1P0CF51 173 aa9.24□□□□□ -0.93
PRPF40A-201ENST00000354363 LYZL1Q6UWQ5 148 aa9.24□□□□□ -0.93
PRPF40A-201ENST00000354363 PGLYRP4Q96LB8 373 aa9.24□□□□□ -0.93
PRPF40A-201ENST00000354363 NIT2Q9NQR4 276 aa9.24□□□□□ -0.93
PRPF40A-201ENST00000354363 TRBV20OR9-2A0A075B6H5 130 aa9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 XKRY2A2RUG3 117 aa9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 RAB5CP51148 216 aa9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 CIRBPQ14011 172 aaKnown RBP9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 KRTAP3-3Q9BYR6 98 aa9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 KRTAP3-2Q9BYR7 98 aa9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 DPH3P1Q9H4G8 78 aa9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 TEX46H3BTG2 121 aa9.23□□□□□ -0.93
PRPF40A-201ENST00000354363 IFNA1P01562 189 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms