RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 GAGE12HA6NDE8 117 aa6.4□□□□□ -1.39
TRIM55-204ENST00000353317 RNASE3P12724 160 aaKnown RBP6.4□□□□□ -1.39
TRIM55-204ENST00000353317 RNASE4P34096 147 aaKnown RBP6.4□□□□□ -1.39
TRIM55-204ENST00000353317 INSL3P51460 131 aa6.4□□□□□ -1.39
TRIM55-204ENST00000353317 CD300EQ496F6 205 aaPredicted RBP6.4□□□□□ -1.39
TRIM55-204ENST00000353317 TEX29Q8N6K0 151 aa6.4□□□□□ -1.39
TRIM55-204ENST00000353317 UBE2E2Q96LR5 201 aa6.4□□□□□ -1.39
TRIM55-204ENST00000353317 IGKV3-7A0A075B6H7 116 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 TMEM89A2RUT3 159 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 CRYGDP07320 174 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 SMAGPQ0VAQ4 97 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 DEFB104AQ8WTQ1 72 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 PLEKHB2Q96CS7 222 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 FAM19A4Q96LR4 140 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 SIGMAR1Q99720 223 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 ZNF815PA8K554 130 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 OVOL1O14753 267 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 DUSP14O95147 198 aaKnown RBP6.39□□□□□ -1.39
TRIM55-204ENST00000353317 CD28P10747 220 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 RPL11P62913 178 aaKnown RBP6.39□□□□□ -1.39
TRIM55-204ENST00000353317 KLHL30-AS1Q8NEE0 82 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 PGPEP1Q9NXJ5 209 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 TRRAPQ9Y4A5 3859 aa6.39□□□□□ -1.39
TRIM55-204ENST00000353317 TSHBP01222 138 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 SLURP1P55000 103 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 SYNJ2BPP57105 145 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 SCGB2A2Q13296 93 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 J3QR89 54 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 HOXD3P31249 432 aaPredicted RBP6.38□□□□□ -1.39
TRIM55-204ENST00000353317 LINC00315P59091 139 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 KRTAP10-3P60369 221 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 SCGB1D4Q6XE38 83 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 APRG1Q8IVJ8 170 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 RHPN1-AS1Q9BWJ2 59 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 MRPL16Q9NX20 251 aaKnown RBP6.38□□□□□ -1.39
TRIM55-204ENST00000353317 MAST4O15021 2626 aa6.38□□□□□ -1.39
TRIM55-204ENST00000353317 MED14OSP0DP75 135 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 EMP1P54849 157 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 SPATA25Q9BR10 227 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 KIF25-AS1Q9Y6Z4 181 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 IGLV4-69A0A075B6H9 119 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 A0A1W2PRX2 142 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 LINC01549A6NIU2 74 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 C11orf86A6NJI1 115 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 UBE2D1P51668 147 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 SFTA2Q6UW10 78 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 POM121L12Q8N7R1 296 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 ZNF418Q8TF45 676 aaPredicted RBP6.37□□□□□ -1.39
TRIM55-204ENST00000353317 JPT2Q9H910 190 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 DAZ1Q9NQZ3 744 aaKnown RBP6.37□□□□□ -1.39
TRIM55-204ENST00000353317 FBN1P35555 2871 aaKnown RBP6.37□□□□□ -1.39
TRIM55-204ENST00000353317 NOTCH3Q9UM47 2321 aa6.37□□□□□ -1.39
TRIM55-204ENST00000353317 IGIPA6NJ69 53 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 PPP1R17O96001 155 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 SRSF9Q13242 221 aaKnown RBP eCLIP6.36□□□□□ -1.39
TRIM55-204ENST00000353317 CITED2Q99967 270 aaPredicted RBP6.36□□□□□ -1.39
TRIM55-204ENST00000353317 C16orf95Q9H693 158 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 TP53TG1Q9Y2A0 90 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 MUC4Q99102 2169 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 NXPH4O95158 308 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 CD7P09564 240 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 SMCPP49901 116 aaPredicted RBP6.36□□□□□ -1.39
TRIM55-204ENST00000353317 RPL39P62891 51 aaKnown RBP6.36□□□□□ -1.39
TRIM55-204ENST00000353317 KHDC1LQ5JSQ8 128 aa6.36□□□□□ -1.39
TRIM55-204ENST00000353317 TMEM238LA0A1B0GVL6 79 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 A6NJY4 79 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 TSPAN13O95857 204 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 SCGB1A1P11684 91 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 POLR2KP53803 58 aaKnown RBP6.35□□□□□ -1.39
TRIM55-204ENST00000353317 CFAP126Q5VTH2 177 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 ZFP2Q6ZN57 461 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 WFDC12Q8WWY7 111 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 DLX4Q92988 240 aaPredicted RBP6.35□□□□□ -1.39
TRIM55-204ENST00000353317 RAX2Q96IS3 184 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 A0A087WWL8 130 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 A0A0J9YY99 117 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 ADARB2-AS1A8MUL3 147 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 APOMO95445 188 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 PROK1P58294 105 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 C4orf3Q8WVX3 66 aa6.35□□□□□ -1.39
TRIM55-204ENST00000353317 LOC107984156A0A0G2JMH3 177 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 TRBV7-9A0A0J9YWB2 115 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 KLLNB2CW77 178 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 K7EMT4 169 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 CRLF1O75462 422 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 TSPEAR-AS2P59090 65 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 SUMO4Q6EEV6 95 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 ARL17AQ8IVW1 177 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 UBE2D3P61077 147 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 UBE2D2P62837 147 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 FOXI1Q12951 378 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 PMVKQ15126 192 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 FAM159AQ6UWV7 190 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 NFE4Q86UQ8 179 aa6.34□□□□□ -1.39
TRIM55-204ENST00000353317 CIDEAO60543 219 aa6.33□□□□□ -1.4
TRIM55-204ENST00000353317 PSMB2P49721 201 aa6.33□□□□□ -1.4
TRIM55-204ENST00000353317 RPL32P62910 135 aaKnown RBP6.33□□□□□ -1.4
TRIM55-204ENST00000353317 NDUFA11Q86Y39 141 aa6.33□□□□□ -1.4
TRIM55-204ENST00000353317 ZNRF2Q8NHG8 242 aa6.33□□□□□ -1.4
TRIM55-204ENST00000353317 DCANP1Q8TF63 244 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms