RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 LINC00315P59091 139 aa11.88□□□□□ -0.51
HMGA1-202ENST00000347617 TTC32Q5I0X7 151 aa11.88□□□□□ -0.51
HMGA1-202ENST00000347617 Q6ZS46 218 aa11.88□□□□□ -0.51
HMGA1-202ENST00000347617 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.88□□□□□ -0.518e-8■■■□□ 18
HMGA1-202ENST00000347617 TRBV30A0A0K0K1B3 111 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 A4D1N5 150 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 GAGE12JA6NER3 117 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 SOCS3O14543 225 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 GAGE7O76087 117 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 GAGE12FP0CL80 117 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 GAGE12GP0CL81 117 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 GAGE12IP0CL82 117 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 RNASE3P12724 160 aaKnown RBP11.87□□□□□ -0.51
HMGA1-202ENST00000347617 IFITM1P13164 125 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 TSPEAR-AS2P59090 65 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 GAGE4Q13068 117 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 LINC01620Q4KN68 170 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 C20orf173Q96LM9 149 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 IGHV3OR16-10A0A075B7F0 116 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 TRBV10-2A0A0K0K1G8 114 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 TMEM223A0PJW6 202 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 LGALS9O00182 355 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 NDUFA4O00483 81 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 TGFAP01135 160 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 IGHV4-31P0DP07 118 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 NSUN5P1Q3KNT7 163 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 Q6ZQT7 251 aa11.87□□□□□ -0.51
HMGA1-202ENST00000347617 IGHV3OR16-13A0A075B7E8 117 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 IGHV3-74A0A0B4J1X5 117 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 TRAV8-4A0A0B4J246 113 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 FSHBP01225 129 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 IGF1P05019 195 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 C19orf54Q5BKX5 351 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 SPANXDQ9BXN6 97 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 ZNF580Q9UK33 172 aa11.86□□□□□ -0.51
HMGA1-202ENST00000347617 ANKRD17O75179 2603 aaKnown RBP11.86□□□□□ -0.51
HMGA1-202ENST00000347617 ASH1LQ9NR48 2969 aaKnown RBP11.86□□□□□ -0.51
HMGA1-202ENST00000347617 UTP20O75691 2785 aaKnown RBP11.85□□□□□ -0.51
HMGA1-202ENST00000347617 M0R2P5 195 aa11.85□□□□□ -0.51
HMGA1-202ENST00000347617 NHLRC4P0CG21 123 aaPredicted RBP11.85□□□□□ -0.51
HMGA1-202ENST00000347617 SUMO4Q6EEV6 95 aa11.85□□□□□ -0.51
HMGA1-202ENST00000347617 Q8N1Y9 231 aa11.85□□□□□ -0.51
HMGA1-202ENST00000347617 MDFICQ9P1T7 246 aa11.85□□□□□ -0.51
HMGA1-202ENST00000347617 PTPN13Q12923 2485 aa11.85□□□□□ -0.51
HMGA1-202ENST00000347617 BAHCC1Q9P281 2608 aa11.85□□□□□ -0.51
HMGA1-202ENST00000347617 LINC01548A6NM66 108 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 IGHG2P01859 326 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 RNASE4P34096 147 aaKnown RBP11.84□□□□□ -0.51
HMGA1-202ENST00000347617 ZNRF2Q8NHG8 242 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 SS18L2Q9UHA2 77 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 FBN2P35556 2912 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 IGHV3-49A0A0A0MS15 119 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 H3BT86 120 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 H3BUX3 64 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 KRTAP1-3Q8IUG1 177 aa11.84□□□□□ -0.51
HMGA1-202ENST00000347617 FAM240AA0A1B0GVK7 77 aa11.83□□□□□ -0.52
HMGA1-202ENST00000347617 H3BMM0 161 aa11.83□□□□□ -0.52
HMGA1-202ENST00000347617 H3BUA1 57 aa11.83□□□□□ -0.52
HMGA1-202ENST00000347617 TMEM219Q86XT9 240 aa11.83□□□□□ -0.52
HMGA1-202ENST00000347617 NTN5Q8WTR8 489 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-202ENST00000347617 UBE2WQ96B02 151 aa11.83□□□□□ -0.52
HMGA1-202ENST00000347617 RAX2Q96IS3 184 aa11.83□□□□□ -0.52
HMGA1-202ENST00000347617 CRYBG3Q68DQ2 2970 aa11.83□□□□□ -0.52
HMGA1-202ENST00000347617 TRAV41A0A0B4J266 112 aa11.82□□□□□ -0.52
HMGA1-202ENST00000347617 B5MCH6 92 aa11.82□□□□□ -0.52
HMGA1-202ENST00000347617 Q96MF0 132 aa11.82□□□□□ -0.52
HMGA1-202ENST00000347617 GNRH2O43555 120 aa11.82□□□□□ -0.52
HMGA1-202ENST00000347617 Q1RN00 199 aa11.82□□□□□ -0.52
HMGA1-202ENST00000347617 FAM159AQ6UWV7 190 aa11.82□□□□□ -0.52
HMGA1-202ENST00000347617 MUSTN1Q8IVN3 82 aa11.82□□□□□ -0.52
HMGA1-202ENST00000347617 PRRC2AP48634 2157 aaKnown RBP11.81□□□□□ -0.52
HMGA1-202ENST00000347617 KLLNB2CW77 178 aa11.81□□□□□ -0.52
HMGA1-202ENST00000347617 G3V318 75 aa11.81□□□□□ -0.52
HMGA1-202ENST00000347617 J3KRW8 73 aa11.81□□□□□ -0.52
HMGA1-202ENST00000347617 COX6CP09669 75 aa11.81□□□□□ -0.52
HMGA1-202ENST00000347617 EMP1P54849 157 aa11.81□□□□□ -0.52
HMGA1-202ENST00000347617 RPL39P62891 51 aaKnown RBP11.81□□□□□ -0.52
HMGA1-202ENST00000347617 TRPT1Q86TN4 253 aaKnown RBP11.81□□□□□ -0.52
HMGA1-202ENST00000347617 TRAV2A0A0B4J234 112 aa11.8□□□□□ -0.52
HMGA1-202ENST00000347617 FAM110AQ9BQ89 295 aa11.8□□□□□ -0.52
HMGA1-202ENST00000347617 NAV2Q8IVL1 2488 aa11.8□□□□□ -0.52
HMGA1-202ENST00000347617 TRAV4A0A0B4J268 109 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 ZNF22P17026 224 aaPredicted RBP11.79□□□□□ -0.52
HMGA1-202ENST00000347617 DEFB112Q30KQ8 113 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 DEFB121Q5J5C9 76 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 ODF3Q96PU9 254 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 F5H697 171 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 C15orf53Q8NAA6 179 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 USMG5Q96IX5 58 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 SPANXCQ9NY87 97 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 CR1P17927 2039 aa11.79□□□□□ -0.52
HMGA1-202ENST00000347617 CELSR2Q9HCU4 2923 aa11.78□□□□□ -0.52
HMGA1-202ENST00000347617 EIF4EBP3O60516 100 aaPredicted RBP11.78□□□□□ -0.52
HMGA1-202ENST00000347617 ID1P41134 155 aa11.78□□□□□ -0.52
HMGA1-202ENST00000347617 LY6EQ16553 131 aa11.78□□□□□ -0.52
HMGA1-202ENST00000347617 MUC4Q99102 2169 aa11.78□□□□□ -0.52
HMGA1-202ENST00000347617 A0A0J9YXY3 114 aa11.77□□□□□ -0.52
HMGA1-202ENST00000347617 Q6YL49 198 aa11.77□□□□□ -0.52
HMGA1-202ENST00000347617 MAPK1IP1LQ8NDC0 245 aa11.77□□□□□ -0.52
HMGA1-202ENST00000347617 YAE1D1Q9NRH1 226 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms