RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 UBE2D3P61077 147 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 UBE2D2P62837 147 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 TTC32Q5I0X7 151 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 OR10J3Q5JRS4 329 aa10.87□□□□□ -0.67
CCDC28A-201ENST00000332797 DNAH10Q8IVF4 4471 aa10.86□□□□□ -0.67
CCDC28A-201ENST00000332797 TRAV8-6A0A0B4J262 113 aa10.86□□□□□ -0.67
CCDC28A-201ENST00000332797 M0QY20 66 aa10.86□□□□□ -0.67
CCDC28A-201ENST00000332797 LELP1Q5T871 98 aa10.86□□□□□ -0.67
CCDC28A-201ENST00000332797 DNAH2Q9P225 4427 aa10.85□□□□□ -0.67
CCDC28A-201ENST00000332797 PPP1R2P9O14990 202 aa10.85□□□□□ -0.67
CCDC28A-201ENST00000332797 RIGQ13278 110 aa10.85□□□□□ -0.67
CCDC28A-201ENST00000332797 SVBPQ8N300 66 aa10.85□□□□□ -0.67
CCDC28A-201ENST00000332797 KRTAP1-5Q9BYS1 174 aa10.85□□□□□ -0.67
CCDC28A-201ENST00000332797 APOC3P02656 99 aa10.84□□□□□ -0.67
CCDC28A-201ENST00000332797 RASL11AQ6T310 242 aa10.84□□□□□ -0.67
CCDC28A-201ENST00000332797 FRAS1Q86XX4 4008 aa10.84□□□□□ -0.67
CCDC28A-201ENST00000332797 A0A087WWC5 75 aa10.83□□□□□ -0.68
CCDC28A-201ENST00000332797 TRAV26-2A0A0B4J265 109 aa10.83□□□□□ -0.68
CCDC28A-201ENST00000332797 IGHV3-38A0A0C4DH36 116 aa10.83□□□□□ -0.68
CCDC28A-201ENST00000332797 SNAPINO95295 136 aa10.83□□□□□ -0.68
CCDC28A-201ENST00000332797 MT-ND4LP03901 98 aa10.83□□□□□ -0.68
CCDC28A-201ENST00000332797 C1orf134Q5TEV5 83 aa10.83□□□□□ -0.68
CCDC28A-201ENST00000332797 TNFRSF18Q9Y5U5 241 aa10.83□□□□□ -0.68
CCDC28A-201ENST00000332797 DNAH10OSP0CZ25 163 aa10.82□□□□□ -0.68
CCDC28A-201ENST00000332797 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.82□□□□□ -0.68
CCDC28A-201ENST00000332797 GATD1Q8NB37 220 aa10.82□□□□□ -0.68
CCDC28A-201ENST00000332797 DNAJC30Q96LL9 226 aa10.82□□□□□ -0.68
CCDC28A-201ENST00000332797 TMEM191AQ9H0A3 160 aa10.82□□□□□ -0.68
CCDC28A-201ENST00000332797 ANAPC16Q96DE5 110 aa10.81□□□□□ -0.68
CCDC28A-201ENST00000332797 RTL8CO15255 209 aa10.81□□□□□ -0.68
CCDC28A-201ENST00000332797 MRPL54Q6P161 138 aaKnown RBP10.81□□□□□ -0.68
CCDC28A-201ENST00000332797 C6orf223Q8N319 242 aa10.81□□□□□ -0.68
CCDC28A-201ENST00000332797 NIT2Q9NQR4 276 aa10.81□□□□□ -0.68
CCDC28A-201ENST00000332797 TRAV9-2A0A087WT02 112 aa10.8□□□□□ -0.68
CCDC28A-201ENST00000332797 CAMPP49913 170 aa10.8□□□□□ -0.68
CCDC28A-201ENST00000332797 DAZ4Q86SG3 579 aaKnown RBP10.8□□□□□ -0.68
CCDC28A-201ENST00000332797 AMN1Q8IY45 258 aa10.8□□□□□ -0.68
CCDC28A-201ENST00000332797 CLRN3Q8NCR9 226 aa10.8□□□□□ -0.68
CCDC28A-201ENST00000332797 DAZ3Q9NR90 486 aaKnown RBP10.8□□□□□ -0.68
CCDC28A-201ENST00000332797 A0A1B0GW15 77 aa10.79□□□□□ -0.68
CCDC28A-201ENST00000332797 IGHV3-30P01768 117 aa10.79□□□□□ -0.68
CCDC28A-201ENST00000332797 IGHV3-33P01772 117 aa10.79□□□□□ -0.68
CCDC28A-201ENST00000332797 IGHV3-30-3P0DP02 117 aa10.79□□□□□ -0.68
CCDC28A-201ENST00000332797 IGHV3-30-5P0DP03 117 aa10.79□□□□□ -0.68
CCDC28A-201ENST00000332797 LINC01556Q5JQF7 62 aa10.79□□□□□ -0.68
CCDC28A-201ENST00000332797 RPL39LQ96EH5 51 aaKnown RBP10.79□□□□□ -0.68
CCDC28A-201ENST00000332797 TRBV6-8A0A0A6YYG3 113 aa10.78□□□□□ -0.68
CCDC28A-201ENST00000332797 RHEBQ15382 184 aa10.78□□□□□ -0.68
CCDC28A-201ENST00000332797 FRZBQ92765 325 aa10.78□□□□□ -0.68
CCDC28A-201ENST00000332797 RNF185Q96GF1 192 aa10.78□□□□□ -0.68
CCDC28A-201ENST00000332797 DNAH17Q9UFH2 4485 aa10.78□□□□□ -0.68
CCDC28A-201ENST00000332797 K7EP13 123 aa10.77□□□□□ -0.69
CCDC28A-201ENST00000332797 RAB4AP20338 218 aa10.77□□□□□ -0.69
CCDC28A-201ENST00000332797 HBBP68871 147 aa10.77□□□□□ -0.69
CCDC28A-201ENST00000332797 TMEM97Q5BJF2 176 aa10.77□□□□□ -0.69
CCDC28A-201ENST00000332797 LINC00336Q6ZUF6 198 aa10.77□□□□□ -0.69
CCDC28A-201ENST00000332797 Q8N3U1 123 aa10.77□□□□□ -0.69
CCDC28A-201ENST00000332797 C10orf126Q8N4M7 172 aa10.77□□□□□ -0.69
CCDC28A-201ENST00000332797 S100A8P05109 93 aa10.76□□□□□ -0.69
CCDC28A-201ENST00000332797 A0A1B0GXF2 115 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 PRSS29PA6NIE9 313 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 GAS8-AS1O95177 125 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 KCNIP4Q6PIL6 250 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 NTM-AS1Q6ZSK4 140 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 ATP5L2Q7Z4Y8 100 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 MRAP2Q96G30 205 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 URGCP-MRPS24S4R325 110 aa10.75□□□□□ -0.69
CCDC28A-201ENST00000332797 C7orf77A4D0Y5 90 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 SMKR1H3BMG3 65 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 NCR2O95944 276 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 BTF3P20290 206 aaKnown RBP10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 FAM104BQ5XKR9 115 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 NIT1Q86X76 327 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 DEFB104AQ8WTQ1 72 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 CHCHD5Q9BSY4 110 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 CTDSP1Q9GZU7 261 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 RPS10P5Q9NQ39 176 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 TRBV25-1A0A075B6N4 114 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 A0A087WX48 190 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 TMEM242Q9NWH2 141 aa10.74□□□□□ -0.69
CCDC28A-201ENST00000332797 FAT2Q9NYQ8 4349 aa10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 IGHV1-24A0A0C4DH33 117 aa10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 SDHAF1A6NFY7 115 aa10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 TMEM262E9PQX1 116 aa10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 RPS10P46783 165 aaKnown RBP10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 COTL1Q14019 142 aa10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 MRPL51Q4U2R6 128 aaKnown RBP10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 ST20Q9HBF5 79 aa10.73□□□□□ -0.69
CCDC28A-201ENST00000332797 EPPK1P58107 5090 aaKnown RBP10.72□□□□□ -0.69
CCDC28A-201ENST00000332797 IBA57-AS1B1ANH7 110 aa10.72□□□□□ -0.69
CCDC28A-201ENST00000332797 IQCJQ1A5X6 159 aa10.72□□□□□ -0.69
CCDC28A-201ENST00000332797 BTF3L4Q96K17 158 aa10.72□□□□□ -0.69
CCDC28A-201ENST00000332797 IMMP2LQ96T52 175 aa10.72□□□□□ -0.69
CCDC28A-201ENST00000332797 TRBV6-5A0A0K0K1A5 114 aa10.71□□□□□ -0.69
CCDC28A-201ENST00000332797 GAGE6Q13070 117 aa10.71□□□□□ -0.69
CCDC28A-201ENST00000332797 NFE4Q86UQ8 179 aa10.71□□□□□ -0.69
CCDC28A-201ENST00000332797 CHCHD7Q9BUK0 85 aa10.71□□□□□ -0.69
CCDC28A-201ENST00000332797 Q9HAA7 133 aa10.71□□□□□ -0.69
CCDC28A-201ENST00000332797 HECTD4Q9Y4D8 3996 aa10.71□□□□□ -0.7
CCDC28A-201ENST00000332797 CKS2P33552 79 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms