RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 KRTAP4-6Q9BYQ5 205 aa10.88□□□□□ -0.67
LSM1-201ENST00000311351 KIF25-AS1Q9Y6Z4 181 aa10.88□□□□□ -0.67
LSM1-201ENST00000311351 F5H697 171 aa10.87□□□□□ -0.67
LSM1-201ENST00000311351 P01737 135 aa10.87□□□□□ -0.67
LSM1-201ENST00000311351 TOR2AQ5JU69 321 aa10.87□□□□□ -0.67
LSM1-201ENST00000311351 SMIM17P0DL12 118 aa10.86□□□□□ -0.67
LSM1-201ENST00000311351 KRTAP10-1P60331 282 aa10.86□□□□□ -0.67
LSM1-201ENST00000311351 WFDC2Q14508 124 aa10.86□□□□□ -0.67
LSM1-201ENST00000311351 DNAJC30Q96LL9 226 aa10.86□□□□□ -0.67
LSM1-201ENST00000311351 FAM210AQ96ND0 272 aa10.86□□□□□ -0.67
LSM1-201ENST00000311351 K7EN84 100 aa10.85□□□□□ -0.67
LSM1-201ENST00000311351 MGPP08493 103 aa10.85□□□□□ -0.67
LSM1-201ENST00000311351 LCE2CQ5TA81 110 aa10.85□□□□□ -0.67
LSM1-201ENST00000311351 NUDT10Q8NFP7 164 aa10.85□□□□□ -0.67
LSM1-201ENST00000311351 NUDT11Q96G61 164 aa10.85□□□□□ -0.67
LSM1-201ENST00000311351 URGCP-MRPS24S4R325 110 aa10.85□□□□□ -0.67
LSM1-201ENST00000311351 TRAV8-3A0A0A6YYJ7 113 aa10.84□□□□□ -0.67
LSM1-201ENST00000311351 LYZL1Q6UWQ5 148 aa10.84□□□□□ -0.67
LSM1-201ENST00000311351 Q8N814 137 aa10.84□□□□□ -0.67
LSM1-201ENST00000311351 KLK12Q9UKR0 248 aa10.84□□□□□ -0.67
LSM1-201ENST00000311351 A0A087WX48 190 aa10.83□□□□□ -0.68
LSM1-201ENST00000311351 IGLV5-52A0A0A0MRZ9 124 aa10.83□□□□□ -0.68
LSM1-201ENST00000311351 TRBV6-8A0A0A6YYG3 113 aa10.83□□□□□ -0.68
LSM1-201ENST00000311351 CEBPGP53567 150 aa10.83□□□□□ -0.68
LSM1-201ENST00000311351 CACNG7P62955 275 aa10.83□□□□□ -0.68
LSM1-201ENST00000311351 OCC1Q8TAD7 63 aa10.83□□□□□ -0.68
LSM1-201ENST00000311351 TM2D2Q9BX73 214 aa10.83□□□□□ -0.68
LSM1-201ENST00000311351 RNASE7Q9H1E1 156 aaKnown RBP10.83□□□□□ -0.68
LSM1-201ENST00000311351 LECT2O14960 151 aa10.82□□□□□ -0.68
LSM1-201ENST00000311351 SUMO4Q6EEV6 95 aa10.82□□□□□ -0.68
LSM1-201ENST00000311351 Q8N1X5 172 aa10.82□□□□□ -0.68
LSM1-201ENST00000311351 RPP21Q9H633 154 aaKnown RBP10.82□□□□□ -0.68
LSM1-201ENST00000311351 F2Z2F3 143 aa10.81□□□□□ -0.68
LSM1-201ENST00000311351 GCSHP23434 173 aa10.81□□□□□ -0.68
LSM1-201ENST00000311351 CTRLP40313 264 aa10.81□□□□□ -0.68
LSM1-201ENST00000311351 UBE2WQ96B02 151 aa10.81□□□□□ -0.68
LSM1-201ENST00000311351 SMIM7Q9BQ49 75 aa10.81□□□□□ -0.68
LSM1-201ENST00000311351 CHCHD7Q9BUK0 85 aa10.81□□□□□ -0.68
LSM1-201ENST00000311351 SMDT1Q9H4I9 107 aa10.81□□□□□ -0.68
LSM1-201ENST00000311351 TMEM262E9PQX1 116 aa10.8□□□□□ -0.68
LSM1-201ENST00000311351 M0QY20 66 aa10.8□□□□□ -0.68
LSM1-201ENST00000311351 XGP55808 180 aa10.8□□□□□ -0.68
LSM1-201ENST00000311351 PEA15Q15121 130 aa10.8□□□□□ -0.68
LSM1-201ENST00000311351 MPV17L2Q567V2 206 aa10.8□□□□□ -0.68
LSM1-201ENST00000311351 NTM-AS1Q6ZSK4 140 aa10.8□□□□□ -0.68
LSM1-201ENST00000311351 NTN5Q8WTR8 489 aaPredicted RBP10.8□□□□□ -0.68
LSM1-201ENST00000311351 IGKV2D-24A0A075B6R9 120 aa10.79□□□□□ -0.68
LSM1-201ENST00000311351 TRGC1P0CF51 173 aa10.79□□□□□ -0.68
LSM1-201ENST00000311351 NTF3P20783 257 aa10.79□□□□□ -0.68
LSM1-201ENST00000311351 RAB14P61106 215 aa10.79□□□□□ -0.68
LSM1-201ENST00000311351 FAM74A3Q4VXF1 159 aa10.79□□□□□ -0.68
LSM1-201ENST00000311351 KCNIP4Q6PIL6 250 aa10.79□□□□□ -0.68
LSM1-201ENST00000311351 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.79□□□□□ -0.68
LSM1-201ENST00000311351 CHCHD5Q9BSY4 110 aa10.79□□□□□ -0.68
LSM1-201ENST00000311351 ZNF727A8MUV8 499 aa10.78□□□□□ -0.68
LSM1-201ENST00000311351 SRP19P09132 144 aaKnown RBP10.78□□□□□ -0.68
LSM1-201ENST00000311351 HAMPP81172 84 aa10.78□□□□□ -0.68
LSM1-201ENST00000311351 C15orf54Q8N8G6 183 aa10.78□□□□□ -0.68
LSM1-201ENST00000311351 BAALCQ8WXS3 180 aa10.78□□□□□ -0.68
LSM1-201ENST00000311351 RMI2Q96E14 147 aa10.78□□□□□ -0.68
LSM1-201ENST00000311351 DPH3P1Q9H4G8 78 aa10.78□□□□□ -0.68
LSM1-201ENST00000311351 FAT1Q14517 4588 aa10.78□□□□□ -0.68
LSM1-201ENST00000311351 H7C1H1 209 aa10.77□□□□□ -0.69
LSM1-201ENST00000311351 ELOBQ15370 118 aa10.77□□□□□ -0.69
LSM1-201ENST00000311351 FAM231DQ6ZW35 169 aa10.77□□□□□ -0.69
LSM1-201ENST00000311351 Q8N976 141 aa10.77□□□□□ -0.69
LSM1-201ENST00000311351 GTSF1Q8WW33 167 aa10.77□□□□□ -0.69
LSM1-201ENST00000311351 CNFNQ9BYD5 112 aa10.77□□□□□ -0.69
LSM1-201ENST00000311351 DNAH8Q96JB1 4490 aa10.77□□□□□ -0.69
LSM1-201ENST00000311351 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.76□□□□□ -0.69
LSM1-201ENST00000311351 GAGE6Q13070 117 aa10.76□□□□□ -0.69
LSM1-201ENST00000311351 TWIST1Q15672 202 aa10.76□□□□□ -0.69
LSM1-201ENST00000311351 WDR73Q6P4I2 378 aa10.76□□□□□ -0.69
LSM1-201ENST00000311351 RASL11AQ6T310 242 aa10.76□□□□□ -0.69
LSM1-201ENST00000311351 COX11Q9Y6N1 276 aa10.76□□□□□ -0.69
LSM1-201ENST00000311351 TRBV25-1A0A075B6N4 114 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 GATCO43716 136 aaKnown RBP10.75□□□□□ -0.69
LSM1-201ENST00000311351 CRPP02741 224 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 ANGP03950 147 aaKnown RBP10.75□□□□□ -0.69
LSM1-201ENST00000311351 TMEM97Q5BJF2 176 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 CT83Q5H943 113 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 ATRAIDQ6UW56 229 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 ENHOQ6UWT2 76 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 LINC01551Q86U37 167 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 DEFB104AQ8WTQ1 72 aa10.75□□□□□ -0.69
LSM1-201ENST00000311351 A8MWL6 223 aa10.74□□□□□ -0.69
LSM1-201ENST00000311351 IQCJQ1A5X6 159 aa10.74□□□□□ -0.69
LSM1-201ENST00000311351 CLPSL2Q6UWE3 100 aa10.74□□□□□ -0.69
LSM1-201ENST00000311351 TRAV26-2A0A0B4J265 109 aa10.73□□□□□ -0.69
LSM1-201ENST00000311351 IGHV1-24A0A0C4DH33 117 aa10.73□□□□□ -0.69
LSM1-201ENST00000311351 RBX1P62877 108 aa10.73□□□□□ -0.69
LSM1-201ENST00000311351 Q0VG73 95 aa10.73□□□□□ -0.69
LSM1-201ENST00000311351 TMEM241Q24JQ0 296 aa10.73□□□□□ -0.69
LSM1-201ENST00000311351 PGLYRP4Q96LB8 373 aa10.73□□□□□ -0.69
LSM1-201ENST00000311351 C1orf43Q9BWL3 253 aa10.73□□□□□ -0.69
LSM1-201ENST00000311351 FOXA3P55318 350 aaPredicted RBP10.72□□□□□ -0.69
LSM1-201ENST00000311351 PKIAP61925 76 aa10.72□□□□□ -0.69
LSM1-201ENST00000311351 GATD1Q8NB37 220 aa10.72□□□□□ -0.69
LSM1-201ENST00000311351 TMEM70Q9BUB7 260 aa10.72□□□□□ -0.69
LSM1-201ENST00000311351 NIT2Q9NQR4 276 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms