RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 DEFB136Q30KP8 78 aa6.81□□□□□ -1.32
NIPBL-201ENST00000282516 C16orf54Q6UWD8 224 aa6.81□□□□□ -1.32
NIPBL-201ENST00000282516 NDUFC1O43677 76 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 HHLA3Q9XRX5 114 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 IGLV3-9A0A075B6K5 115 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 PRR20EP86478 221 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 PRR20CP86479 221 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 PRR20DP86480 221 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 PRR20BP86481 221 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 PRR20AP86496 221 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 C10orf105Q8TEF2 133 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 A0A0J9YXV3 536 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 IGKV2D-26A0A0A0MRZ7 120 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 UQCRQO14949 82 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 A0A0U1RQV1 116 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 ARTNQ5T4W7 220 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 A6NED7 52 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 KAAG1Q9UBP8 84 aa6.8□□□□□ -1.32
NIPBL-201ENST00000282516 LYRM9A8MSI8 78 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 PRR30Q53SZ7 412 aaPredicted RBP6.79□□□□□ -1.32
NIPBL-201ENST00000282516 RNF144BQ7Z419 303 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 ZNF491Q8N8L2 437 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 NPBQ8NG41 125 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 RNF138Q8WVD3 245 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 FXYD2P54710 66 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 SLURP1P55000 103 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 UFSP1Q6NVU6 142 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 IGFL3Q6UXB1 125 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 PIEZO2Q9H5I5 2752 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 J3QKU1 62 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 CTRLP40313 264 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 MIAQ16674 131 aa6.79□□□□□ -1.32
NIPBL-201ENST00000282516 MED14OSP0DP75 135 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 K7ENP7 123 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 JMJD1CQ15652 2540 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 E9PLD3 99 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 WFDC2Q14508 124 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 ASPHD1Q5U4P2 390 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 HIST2H2BDQ6DRA6 164 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 APRG1Q8IVJ8 170 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 ABCA12Q86UK0 2595 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 G3V4G9 280 aa6.78□□□□□ -1.32
NIPBL-201ENST00000282516 COL4A5P29400 1685 aa6.77□□□□□ -1.32
NIPBL-201ENST00000282516 IGHV4-59P01825 116 aa6.77□□□□□ -1.32
NIPBL-201ENST00000282516 WISP1O95388 367 aa6.77□□□□□ -1.33
NIPBL-201ENST00000282516 GATA1P15976 413 aaPredicted RBP6.77□□□□□ -1.33
NIPBL-201ENST00000282516 TMEM263Q8WUH6 116 aaKnown RBP6.77□□□□□ -1.33
NIPBL-201ENST00000282516 RPL39P62891 51 aaKnown RBP6.77□□□□□ -1.33
NIPBL-201ENST00000282516 C17orf82Q86X59 251 aaPredicted RBP6.77□□□□□ -1.33
NIPBL-201ENST00000282516 MIR7-3HGQ8N6C7 128 aa6.77□□□□□ -1.33
NIPBL-201ENST00000282516 PKD1L2Q7Z442 2459 aa6.77□□□□□ -1.33
NIPBL-201ENST00000282516 SERP1Q9Y6X1 66 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 COA6Q5JTJ3 125 aaKnown RBP6.76□□□□□ -1.33
NIPBL-201ENST00000282516 NDUFA11Q86Y39 141 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 WFDC11Q8NEX6 87 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 TRAV26-1A0A087WT03 109 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 TEX49A0A1B0GTD5 131 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 MLST8Q9BVC4 326 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 KLK12Q9UKR0 248 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 WFDC10BQ8IUB3 73 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 C20orf197Q8N268 126 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 C4orf3Q8WVX3 66 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 DEFB135Q30KP9 77 aa6.76□□□□□ -1.33
NIPBL-201ENST00000282516 SDIM1Q6ZPB5 146 aa6.75□□□□□ -1.33
NIPBL-201ENST00000282516 Q6ZR03 302 aa6.75□□□□□ -1.33
NIPBL-201ENST00000282516 GPHB5Q86YW7 130 aa6.75□□□□□ -1.33
NIPBL-201ENST00000282516 IGLV1-44P01699 117 aa6.75□□□□□ -1.33
NIPBL-201ENST00000282516 FAM19A3Q7Z5A8 133 aa6.75□□□□□ -1.33
NIPBL-201ENST00000282516 DEFB112Q30KQ8 113 aa6.74□□□□□ -1.33
NIPBL-201ENST00000282516 ODF1Q14990 250 aa6.74□□□□□ -1.33
NIPBL-201ENST00000282516 ZNF706Q9Y5V0 76 aaPredicted RBP6.74□□□□□ -1.33
NIPBL-201ENST00000282516 C2orf70A6NJV1 201 aa6.74□□□□□ -1.33
NIPBL-201ENST00000282516 GTSF1Q8WW33 167 aa6.74□□□□□ -1.33
NIPBL-201ENST00000282516 NFE4Q86UQ8 179 aa6.74□□□□□ -1.33
NIPBL-201ENST00000282516 TCL1BO95988 128 aa6.74□□□□□ -1.33
NIPBL-201ENST00000282516 HIGD2AQ9BW72 106 aa6.74□□□□□ -1.33
NIPBL-201ENST00000282516 LYPD6Q86Y78 171 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 IGKV2-24A0A0C4DH68 120 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 Q8NFD4 153 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 LYPD6BQ8NI32 183 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 TRBV10-1A0A0K0K1A3 114 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 ENHOQ6UWT2 76 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 SMAD5-AS1Q9Y6J3 95 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 MDFICQ9P1T7 246 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 COL4A1P02462 1669 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 A0A087WZ39 114 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 RNASE8Q8TDE3 154 aaKnown RBP6.73□□□□□ -1.33
NIPBL-201ENST00000282516 C7orf33Q8WU49 177 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 PTPRBP23467 1997 aa6.73□□□□□ -1.33
NIPBL-201ENST00000282516 LRCOL1A6NCL2 159 aa6.72□□□□□ -1.33
NIPBL-201ENST00000282516 NDUFA7O95182 113 aa6.72□□□□□ -1.33
NIPBL-201ENST00000282516 Q8N9L7 120 aa6.72□□□□□ -1.33
NIPBL-201ENST00000282516 USP9XQ93008 2570 aaPredicted RBP6.72□□□□□ -1.33
NIPBL-201ENST00000282516 H7C423 109 aa6.72□□□□□ -1.33
NIPBL-201ENST00000282516 C1orf147Q96MC9 270 aaPredicted RBP6.72□□□□□ -1.33
NIPBL-201ENST00000282516 RAI1Q7Z5J4 1906 aaPredicted RBP6.72□□□□□ -1.33
NIPBL-201ENST00000282516 IGLV11-55A0A075B6I3 123 aa6.72□□□□□ -1.33
NIPBL-201ENST00000282516 LINC00173Q6ZV60 143 aa6.72□□□□□ -1.33
NIPBL-201ENST00000282516 IGHV7-81A0A0B4J1V7 117 aa6.72□□□□□ -1.33
NIPBL-201ENST00000282516 I3L2K1 104 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms