RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 MDFICQ9P1T7 246 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 KLK5Q9Y337 293 aaPredicted RBP14.42□□□□□ -0.1
PTPRE-201ENST00000254667 C11orf86A6NJI1 115 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 DEFB1P60022 68 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 CRYGBP07316 175 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 C11orf71Q6IPW1 123 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 MUSTN1Q8IVN3 82 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 TINCRA0A1B0GVN0 87 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 E9PLD3 99 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 NPSP0C0P6 89 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 ESM1Q9NQ30 184 aa14.42□□□□□ -0.1
PTPRE-201ENST00000254667 C20orf203Q8NBC4 194 aa14.41□□□□□ -0.1
PTPRE-201ENST00000254667 LY6LH3BQJ8 138 aa14.41□□□□□ -0.1
PTPRE-201ENST00000254667 LINC01548A6NM66 108 aa14.4□□□□□ -0.1
PTPRE-201ENST00000254667 ANKRD29Q8N6D5 301 aa14.4□□□□□ -0.1
PTPRE-201ENST00000254667 SPG11Q96JI7 2443 aa14.4□□□□□ -0.1
PTPRE-201ENST00000254667 A4D1N5 150 aa14.39□□□□□ -0.11
PTPRE-201ENST00000254667 IGLL5B9A064 214 aa14.39□□□□□ -0.11
PTPRE-201ENST00000254667 ACYP1P07311 99 aa14.39□□□□□ -0.11
PTPRE-201ENST00000254667 OPRPNQ99935 248 aaPredicted RBP14.39□□□□□ -0.11
PTPRE-201ENST00000254667 NCOA6Q14686 2063 aaPredicted RBP14.39□□□□□ -0.11
PTPRE-201ENST00000254667 K7EQG2 157 aa14.39□□□□□ -0.11
PTPRE-201ENST00000254667 FUSP35637 526 aaKnown RBP eCLIP14.38□□□□□ -0.11
PTPRE-201ENST00000254667 IL17DQ8TAD2 202 aa14.38□□□□□ -0.11
PTPRE-201ENST00000254667 SMIM9A6NGZ8 99 aa14.38□□□□□ -0.11
PTPRE-201ENST00000254667 NOTCH2Q04721 2471 aa14.37□□□□□ -0.11
PTPRE-201ENST00000254667 C10orf142B7Z368 130 aa14.37□□□□□ -0.11
PTPRE-201ENST00000254667 WFDC11Q8NEX6 87 aa14.37□□□□□ -0.11
PTPRE-201ENST00000254667 GAGE12HA6NDE8 117 aa14.37□□□□□ -0.11
PTPRE-201ENST00000254667 SPAG11BQ08648 103 aa14.37□□□□□ -0.11
PTPRE-201ENST00000254667 A0A1B0GXF2 115 aa14.36□□□□□ -0.11
PTPRE-201ENST00000254667 C1orf229Q6ZS94 237 aaPredicted RBP14.36□□□□□ -0.11
PTPRE-201ENST00000254667 DEFB105AQ8NG35 78 aa14.36□□□□□ -0.11
PTPRE-201ENST00000254667 hADV29S1A0JD25 119 aa14.36□□□□□ -0.11
PTPRE-201ENST00000254667 DEFB114Q30KQ6 69 aa14.36□□□□□ -0.11
PTPRE-201ENST00000254667 C15orf53Q8NAA6 179 aa14.36□□□□□ -0.11
PTPRE-201ENST00000254667 IGHV1-58A0A0C4DH39 117 aa14.35□□□□□ -0.11
PTPRE-201ENST00000254667 DEFB4AO15263 64 aa14.35□□□□□ -0.11
PTPRE-201ENST00000254667 ODF1Q14990 250 aa14.35□□□□□ -0.11
PTPRE-201ENST00000254667 CCL25O15444 150 aa14.35□□□□□ -0.11
PTPRE-201ENST00000254667 ZNF80P51504 273 aaPredicted RBP14.35□□□□□ -0.11
PTPRE-201ENST00000254667 KLK12Q9UKR0 248 aa14.35□□□□□ -0.11
PTPRE-201ENST00000254667 TNRC6AQ8NDV7 1962 aaKnown RBP14.35□□□□□ -0.11
PTPRE-201ENST00000254667 ZNF843Q8N446 348 aa14.34□□□□□ -0.11
PTPRE-201ENST00000254667 ZNF295-AS1Q8N0V1 137 aa14.34□□□□□ -0.11
PTPRE-201ENST00000254667 IGLV2-8P01709 118 aa14.34□□□□□ -0.11
PTPRE-201ENST00000254667 IGLC6P0CF74 106 aa14.34□□□□□ -0.11
PTPRE-201ENST00000254667 LYRM9A8MSI8 78 aa14.33□□□□□ -0.12
PTPRE-201ENST00000254667 CDPF1Q6NVV7 123 aa14.33□□□□□ -0.12
PTPRE-201ENST00000254667 MLST8Q9BVC4 326 aa14.33□□□□□ -0.12
PTPRE-201ENST00000254667 OTOGLQ3ZCN5 2332 aa14.32□□□□□ -0.12
PTPRE-201ENST00000254667 PCDH15Q96QU1 1955 aa14.32□□□□□ -0.12
PTPRE-201ENST00000254667 CRYBA4P53673 196 aa14.31□□□□□ -0.12
PTPRE-201ENST00000254667 MUC22E2RYF6 1773 aaPredicted RBP14.31□□□□□ -0.12
PTPRE-201ENST00000254667 CHD3Q12873 2000 aaKnown RBP14.31□□□□□ -0.12
PTPRE-201ENST00000254667 SPATA12Q7Z6I5 190 aa14.31□□□□□ -0.12
PTPRE-201ENST00000254667 ZFAND3Q9H8U3 227 aa14.31□□□□□ -0.12
PTPRE-201ENST00000254667 C11orf45Q8TAV5 145 aa14.3□□□□□ -0.12
PTPRE-201ENST00000254667 IGHV4-4A0A075B6R2 117 aa14.3□□□□□ -0.12
PTPRE-201ENST00000254667 Q6ZSV7 163 aa14.3□□□□□ -0.12
PTPRE-201ENST00000254667 ALPK3Q96L96 1907 aa14.3□□□□□ -0.12
PTPRE-201ENST00000254667 CACNA1AO00555 2505 aa14.3□□□□□ -0.12
PTPRE-201ENST00000254667 FRMD6-AS1P0C7T7 363 aa14.29□□□□□ -0.12
PTPRE-201ENST00000254667 FXYD2P54710 66 aa14.28□□□□□ -0.12
PTPRE-201ENST00000254667 TDRG1Q3Y452 100 aa14.28□□□□□ -0.12
PTPRE-201ENST00000254667 LINC01620Q4KN68 170 aa14.28□□□□□ -0.12
PTPRE-201ENST00000254667 Q6ZTI0 123 aa14.28□□□□□ -0.12
PTPRE-201ENST00000254667 LINC00322Q6ZN03 302 aaPredicted RBP14.28□□□□□ -0.12
PTPRE-201ENST00000254667 H7C423 109 aa14.28□□□□□ -0.12
PTPRE-201ENST00000254667 PSMG3-AS1Q96PY0 264 aa14.27□□□□□ -0.12
PTPRE-201ENST00000254667 NUP210LQ5VU65 1888 aa14.27□□□□□ -0.13
PTPRE-201ENST00000254667 C14orf177Q52M58 125 aa14.27□□□□□ -0.13
PTPRE-201ENST00000254667 SHISA2Q6UWI4 295 aa14.27□□□□□ -0.13
PTPRE-201ENST00000254667 DAND5Q8N907 189 aa14.27□□□□□ -0.13
PTPRE-201ENST00000254667 TP53TG3Q9ULZ0 132 aa14.27□□□□□ -0.13
PTPRE-201ENST00000254667 TRACP01848 142 aa14.27□□□□□ -0.13
PTPRE-201ENST00000254667 MIR7-3HGQ8N6C7 128 aa14.27□□□□□ -0.13
PTPRE-201ENST00000254667 JMJD7-PLA2G4BH0Y9G9 81 aa14.26□□□□□ -0.13
PTPRE-201ENST00000254667 DIRC1Q969H9 104 aa14.26□□□□□ -0.13
PTPRE-201ENST00000254667 INAFM1C9JVW0 142 aa14.26□□□□□ -0.13
PTPRE-201ENST00000254667 UBE2AP49459 152 aa14.26□□□□□ -0.13
PTPRE-201ENST00000254667 Q6ZUT4 128 aa14.26□□□□□ -0.13
PTPRE-201ENST00000254667 Q8N6K4 173 aa14.26□□□□□ -0.13
PTPRE-201ENST00000254667 NACAE9PAV3 2078 aa14.25□□□□□ -0.13
PTPRE-201ENST00000254667 NCR3O14931 201 aa14.25□□□□□ -0.13
PTPRE-201ENST00000254667 TTTY13Q9BZ97 58 aa14.25□□□□□ -0.13
PTPRE-201ENST00000254667 CSPG4Q6UVK1 2322 aa14.25□□□□□ -0.13
PTPRE-201ENST00000254667 FAM222AQ5U5X8 452 aa14.25□□□□□ -0.13
PTPRE-201ENST00000254667 C20orf173Q96LM9 149 aa14.25□□□□□ -0.13
PTPRE-201ENST00000254667 SPANXCQ9NY87 97 aa14.25□□□□□ -0.13
PTPRE-201ENST00000254667 MBD6Q96DN6 1003 aa14.24□□□□□ -0.13
PTPRE-201ENST00000254667 MED12LQ86YW9 2145 aa14.24□□□□□ -0.13
PTPRE-201ENST00000254667 TRAV26-1A0A087WT03 109 aa14.24□□□□□ -0.13
PTPRE-201ENST00000254667 ZFAND2AQ8N6M9 145 aa14.24□□□□□ -0.13
PTPRE-201ENST00000254667 TEN1Q86WV5 123 aa14.23□□□□□ -0.13
PTPRE-201ENST00000254667 NDUFS5O43920 106 aa14.23□□□□□ -0.13
PTPRE-201ENST00000254667 NDUFB1O75438 58 aa14.23□□□□□ -0.13
PTPRE-201ENST00000254667 PSMB8P28062 276 aa14.23□□□□□ -0.13
PTPRE-201ENST00000254667 A0A0B4J2C4 111 aa14.22□□□□□ -0.13
PTPRE-201ENST00000254667 MIFP14174 115 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms