RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 SHISA2Q6UWI4 295 aa6.57□□□□□ -1.36
PTCD3-201ENST00000254630 EIF4EBP1Q13541 118 aaPredicted RBP6.56□□□□□ -1.36
PTCD3-201ENST00000254630 C20orf203Q8NBC4 194 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 CITED1Q99966 193 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 IGKV3D-7A0A0C4DH55 119 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 TMEM258P61165 79 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 ODF1Q14990 250 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 DEFB131BA0A096LNP1 70 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 LECT2O14960 151 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 MIAQ16674 131 aa6.56□□□□□ -1.36
PTCD3-201ENST00000254630 PSMB8P28062 276 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 ZNF702PQ9H963 129 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 Q6ZSV7 163 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 WFDC9Q8NEX5 89 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 TMEM256-PLSCR3K7ERE1 68 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 FXYD2P54710 66 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 MP68P56378 58 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 RBM3P98179 157 aaKnown RBP6.55□□□□□ -1.36
PTCD3-201ENST00000254630 LINC00467Q9BRT7 94 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 K7EQG2 157 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 COA6Q5JTJ3 125 aaKnown RBP6.55□□□□□ -1.36
PTCD3-201ENST00000254630 NEXN-AS1Q8NBZ9 246 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 JMJD7-PLA2G4BH0Y9G9 81 aa6.55□□□□□ -1.36
PTCD3-201ENST00000254630 IGKV2-24A0A0C4DH68 120 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 C22orf34Q6ZV56 151 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 CHCHD10Q8WYQ3 142 aaPredicted RBP6.54□□□□□ -1.36
PTCD3-201ENST00000254630 HIST2H2BDQ6DRA6 164 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 PTPRSQ13332 1948 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 TRBV10-2A0A0K0K1G8 114 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 UFSP1Q6NVU6 142 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 SPANXCQ9NY87 97 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 SDK2Q58EX2 2172 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 A0A1B0GX51 115 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 H0Y9J4 135 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 LINC00482Q8N8I6 264 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 ASXL3Q9C0F0 2248 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 CFAP126Q5VTH2 177 aa6.54□□□□□ -1.36
PTCD3-201ENST00000254630 MIFP14174 115 aa6.53□□□□□ -1.36
PTCD3-201ENST00000254630 Q6ZPA2 131 aa6.53□□□□□ -1.36
PTCD3-201ENST00000254630 ZFAND3Q9H8U3 227 aa6.53□□□□□ -1.36
PTCD3-201ENST00000254630 PLA2G2AP14555 144 aa6.53□□□□□ -1.36
PTCD3-201ENST00000254630 BRWD1-AS2P59051 145 aa6.53□□□□□ -1.36
PTCD3-201ENST00000254630 IGLV2-8P01709 118 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 FRMD6-AS1P0C7T7 363 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 EBI3Q14213 229 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 A0A1B0GXF2 115 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 TDRG1Q3Y452 100 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 PSMG3-AS1Q96PY0 264 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 MED12Q93074 2177 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 TTTY13Q9BZ97 58 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 C5orf47Q569G3 176 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 CRIP3Q6Q6R5 217 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 C10orf99Q6UWK7 81 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 C14orf132Q9NPU4 83 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 IGLC6P0CF74 106 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 GDF5OSQ5U4N7 250 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 LINC00322Q6ZN03 302 aaPredicted RBP6.52□□□□□ -1.37
PTCD3-201ENST00000254630 FAM19A1Q7Z5A9 133 aa6.52□□□□□ -1.37
PTCD3-201ENST00000254630 A0A0J9YXY3 114 aa6.51□□□□□ -1.37
PTCD3-201ENST00000254630 TMEM223A0PJW6 202 aa6.51□□□□□ -1.37
PTCD3-201ENST00000254630 ATOX1O00244 68 aa6.51□□□□□ -1.37
PTCD3-201ENST00000254630 PRB2P02812 416 aaPredicted RBP6.51□□□□□ -1.37
PTCD3-201ENST00000254630 TRAV10A0A0B4J240 114 aa6.51□□□□□ -1.37
PTCD3-201ENST00000254630 LRP4O75096 1905 aa6.51□□□□□ -1.37
PTCD3-201ENST00000254630 C18orf65Q6ZTR6 163 aa6.5□□□□□ -1.37
PTCD3-201ENST00000254630 ESPL1Q14674 2120 aa6.5□□□□□ -1.37
PTCD3-201ENST00000254630 FAM19A5Q7Z5A7 132 aaPredicted RBP6.5□□□□□ -1.37
PTCD3-201ENST00000254630 KIR2DL5BQ8NHK3 375 aa6.5□□□□□ -1.37
PTCD3-201ENST00000254630 PTPRZ1P23471 2315 aaPredicted RBP6.5□□□□□ -1.37
PTCD3-201ENST00000254630 DNAJC13O75165 2243 aa6.5□□□□□ -1.37
PTCD3-201ENST00000254630 TRIOBPQ9H2D6 2365 aa6.5□□□□□ -1.37
PTCD3-201ENST00000254630 TEN1Q86WV5 123 aa6.5□□□□□ -1.37
PTCD3-201ENST00000254630 LRCOL1A6NCL2 159 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 TAX1BP3O14907 124 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 DOCK11Q5JSL3 2073 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 COL5A1P20908 1838 aaPredicted RBP6.49□□□□□ -1.37
PTCD3-201ENST00000254630 TRBV6-8A0A0A6YYG3 113 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 SMIM20Q8N5G0 67 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 FAM236AA0A1B0GUQ0 79 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 FAM236BA0A1B0GV22 79 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 ZNF295-AS1Q8N0V1 137 aa6.49□□□□□ -1.37
PTCD3-201ENST00000254630 A0A087WZ39 114 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 TRBV6-4A0A1B0GX49 114 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 H3BT86 120 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 FOXI1Q12951 378 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 PROK1P58294 105 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 U3KQK5 164 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 IGLV4-3A0A075B6K6 122 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 PDE6GP18545 87 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 WFDC2Q14508 124 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 Q8N6K4 173 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 SS18L2Q9UHA2 77 aa6.48□□□□□ -1.37
PTCD3-201ENST00000254630 TCL1BO95988 128 aa6.47□□□□□ -1.37
PTCD3-201ENST00000254630 HIGD2AQ9BW72 106 aa6.47□□□□□ -1.37
PTCD3-201ENST00000254630 BBC3Q96PG8 261 aaPredicted RBP6.47□□□□□ -1.37
PTCD3-201ENST00000254630 C7orf33Q8WU49 177 aa6.47□□□□□ -1.37
PTCD3-201ENST00000254630 M0QY20 66 aa6.47□□□□□ -1.37
PTCD3-201ENST00000254630 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.47□□□□□ -1.37
PTCD3-201ENST00000254630 RNF185Q96GF1 192 aa6.47□□□□□ -1.37
PTCD3-201ENST00000254630 IGKV2D-26A0A0A0MRZ7 120 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms