RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 LINC00482Q8N8I6 264 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 MDS2Q8NDY4 140 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 IMMP1LQ96LU5 166 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 LINC01600Q96MT4 127 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 SPTBN1Q01082 2364 aaKnown RBP4.38□□□□□ -1.71
SCN1A-216ENST00000637968 BDP1A6H8Y1 2624 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 TRAV7A0A075B6U4 112 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 F6UB75 175 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 C10orf55Q5SWW7 151 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 TMEM167AQ8TBQ9 72 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 Q96MF0 132 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 NACAE9PAV3 2078 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 IGLV2-11P01706 119 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 SAA4P35542 130 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 CRIP1P50238 77 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 FDCSPQ8NFU4 85 aa4.38□□□□□ -1.71
SCN1A-216ENST00000637968 A0A0J9YXY3 114 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 ADARB2-AS1A8MUL3 147 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 LY6LH3BQJ8 138 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 CRPP02741 224 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 ZNF672Q499Z4 452 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-216ENST00000637968 SMCR5Q8TEV8 140 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 C14orf132Q9NPU4 83 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 RNF7Q9UBF6 113 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 SNURFQ9Y675 71 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 EML6Q6ZMW3 1958 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 SPTAN1Q13813 2472 aaKnown RBP4.37□□□□□ -1.71
SCN1A-216ENST00000637968 KIAA1549LQ6ZVL6 1849 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 C14orf178Q8N769 122 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-216ENST00000637968 PLCE1Q9P212 2302 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 LYRM9A8MSI8 78 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 TFF1P04155 84 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 SS18Q15532 418 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 TRGV3P03979 118 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 CCKP06307 115 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 MIAQ16674 131 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 UPK3BQ9BT76 320 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 ARFGEF3Q5TH69 2177 aa4.37□□□□□ -1.71
SCN1A-216ENST00000637968 ARHGEF17Q96PE2 2063 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-216ENST00000637968 NBASA2RRP1 2371 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 BPTFQ12830 3046 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 IGKV3-7A0A075B6H7 116 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 RNASE1P07998 156 aaKnown RBP4.36□□□□□ -1.71
SCN1A-216ENST00000637968 PCOLCEQ15113 449 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 FAM222AQ5U5X8 452 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 TIMM17AQ99595 171 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 COL6A6A6NMZ7 2263 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 IGKV1-16P04430 117 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 CD28P10747 220 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 WT1-ASQ06250 92 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 H3BRN7 92 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 GAS8-AS1O95177 125 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 PF4P02776 101 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 DCANP1Q8TF63 244 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 IGKV1D-37A0A075B6S9 117 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 TRBV12-3P01733 135 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 VPREB1P12018 145 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 ATP1A1-AS1Q5TC04 95 aa4.36□□□□□ -1.71
SCN1A-216ENST00000637968 PTPRBP23467 1997 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 POLEQ07864 2286 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 SDK2Q58EX2 2172 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 A8MZ25 164 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 HAMPP81172 84 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 MRPL14Q6P1L8 145 aaKnown RBP4.35□□□□□ -1.71
SCN1A-216ENST00000637968 ENHOQ6UWT2 76 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 ZNRF1Q8ND25 227 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 PRSS33Q8NF86 280 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 CPAMD8Q8IZJ3 1885 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 HTN1P15515 57 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 FAM19A1Q7Z5A9 133 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 TMEM61Q8N0U2 210 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 CUL9Q8IWT3 2517 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 FREM1Q5H8C1 2179 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 FER1L5A0AVI2 2057 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 IGLV2-18A0A075B6J9 118 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 IGHV1-58A0A0C4DH39 117 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 FUSP35637 526 aaKnown RBP eCLIP4.35□□□□□ -1.71
SCN1A-216ENST00000637968 NRACQ8N912 160 aa4.35□□□□□ -1.71
SCN1A-216ENST00000637968 COL5A1P20908 1838 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-216ENST00000637968 TNRC6BQ9UPQ9 1833 aaKnown RBP4.35□□□□□ -1.71
SCN1A-216ENST00000637968 A0A0J9YX75 114 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 DEFB104AQ8WTQ1 72 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 TRAV13-2A0A0B4J235 113 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 RPL39LQ96EH5 51 aaKnown RBP4.34□□□□□ -1.71
SCN1A-216ENST00000637968 CYSTM1Q9H1C7 97 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 WNK2Q9Y3S1 2297 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 ZFHX2Q9C0A1 2572 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-216ENST00000637968 WISP2O76076 250 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 SPTSSBQ8NFR3 76 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 KLF14Q8TD94 323 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-216ENST00000637968 Q9HAA7 133 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 LINC00474Q9P2X8 69 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 ABCA4P78363 2273 aa4.34□□□□□ -1.71
SCN1A-216ENST00000637968 PROP1O75360 226 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 TSPEAR-AS2P59090 65 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 UBE2BP63146 152 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 ECSCRQ19T08 205 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 FAM74A4Q5TZK3 123 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 WDR86Q86TI4 376 aa4.34□□□□□ -1.72
SCN1A-216ENST00000637968 PRR15Q8IV56 129 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms