RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 ACYP1P07311 99 aa3.91□□□□□ -1.78
VPS13D-214ENST00000620676 H7C423 109 aa3.91□□□□□ -1.78
VPS13D-214ENST00000620676 TMEM105Q8N8V8 129 aa3.91□□□□□ -1.78
VPS13D-214ENST00000620676 TMEM131Q92545 1883 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 HOXB4P17483 251 aaPredicted RBP3.9□□□□□ -1.78
VPS13D-214ENST00000620676 FANCD2OSQ96PS1 177 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 C1orf229Q6ZS94 237 aaPredicted RBP3.9□□□□□ -1.78
VPS13D-214ENST00000620676 VMO1Q7Z5L0 202 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 CSPG4Q6UVK1 2322 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 SORL1Q92673 2214 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 A0A0J9YWU9 116 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 C17orf100A8MU93 164 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 PIK3CD-AS1Q5SR53 167 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 XCL2Q9UBD3 114 aa3.9□□□□□ -1.78
VPS13D-214ENST00000620676 URB1-AS1Q96HZ7 61 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 LINC00643Q86TS7 51 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 LYPD1Q8N2G4 141 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 NAV2Q8IVL1 2488 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 A0A096LPF7 62 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 TRGV4A0A0C4DH28 118 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 SAP25Q8TEE9 199 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 SPANXCQ9NY87 97 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 PLXNB1O43157 2135 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 H3BRN7 92 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 CXCL5P42830 114 aa3.9□□□□□ -1.79
VPS13D-214ENST00000620676 SRRM5B3KS81 715 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 NDUFC2-KCTD14E9PQ53 114 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 ZNF80P51504 273 aaPredicted RBP3.89□□□□□ -1.79
VPS13D-214ENST00000620676 TANC2Q9HCD6 1990 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 TIMM17BO60830 172 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 PRR30Q53SZ7 412 aaPredicted RBP3.89□□□□□ -1.79
VPS13D-214ENST00000620676 SOSTDC1Q6X4U4 206 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 TMEM14CQ9P0S9 112 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 XCL1P47992 114 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 C11orf53Q8IXP5 236 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 MRPL55Q7Z7F7 128 aaKnown RBP3.89□□□□□ -1.79
VPS13D-214ENST00000620676 FREM1Q5H8C1 2179 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 CRIP3Q6Q6R5 217 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 IGHV4OR15-8A0A075B7B6 117 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 A0A087WW49 117 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 DAZ2Q13117 558 aaKnown RBP3.89□□□□□ -1.79
VPS13D-214ENST00000620676 DAZ4Q86SG3 579 aaKnown RBP3.89□□□□□ -1.79
VPS13D-214ENST00000620676 DAZ1Q9NQZ3 744 aaKnown RBP3.89□□□□□ -1.79
VPS13D-214ENST00000620676 DAZ3Q9NR90 486 aaKnown RBP3.89□□□□□ -1.79
VPS13D-214ENST00000620676 A0A087WVE0 104 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 PSPHP1O15172 72 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 LRRC75A-AS1Q8N1F1 130 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 KIAA1671Q9BY89 1806 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 KMT2EQ8IZD2 1858 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 TRAV13-2A0A0B4J235 113 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 C5orf38Q86SI9 138 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 THAP8Q8NA92 274 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 CRIP1P50238 77 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 ZNF833PQ6ZTB9 187 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 NRGNQ92686 78 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 LECT2O14960 151 aa3.89□□□□□ -1.79
VPS13D-214ENST00000620676 IGLV3-1P01715 115 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 RHPN1-AS1Q9BWJ2 59 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 FUSP35637 526 aaKnown RBP eCLIP3.88□□□□□ -1.79
VPS13D-214ENST00000620676 SIP14410 1827 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 A0A0J9YXY3 114 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 ZNRF2Q8NHG8 242 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 COL4A3Q01955 1670 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 B9A039 149 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 PRSS22Q9GZN4 317 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 TRBV12-3P01733 135 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 BRD3OSQ6XYD6 125 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 THBDP07204 575 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 TMEM178BH3BS89 294 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 C22orf34Q6ZV56 151 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 U3KQK5 164 aa3.88□□□□□ -1.79
VPS13D-214ENST00000620676 C19orf71A6NCJ1 209 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 J3QLI3 93 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 PRSS33Q8NF86 280 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 TMEM263Q8WUH6 116 aaKnown RBP3.87□□□□□ -1.79
VPS13D-214ENST00000620676 MALRD1Q5VYJ5 2156 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 DEFB130BP0DP73 79 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 DEFB130AP0DP74 79 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 TIRAPP58753 221 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 RUSC1-AS1Q66K80 236 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 TLN1Q9Y490 2541 aaKnown RBP3.87□□□□□ -1.79
VPS13D-214ENST00000620676 JMJD1CQ15652 2540 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 FAM223BA6NKX1 122 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 WT1P19544 449 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-214ENST00000620676 FAM223AQ8IWN6 122 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 ANAPC1Q9H1A4 1944 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 USP9XQ93008 2570 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-214ENST00000620676 USP17L23D6RBM5 183 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 IGHV3-30P01768 117 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 IGHV3-30-5P0DP03 117 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 RNF185Q96GF1 192 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 IGKV1-17P01599 117 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 ZNF883P0CG24 379 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 IGHV3-30-3P0DP02 117 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 CTSZQ9UBR2 303 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 IGLV2-11P01706 119 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 SPTBN4Q9H254 2564 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 SERP2Q8N6R1 65 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 MDFICQ9P1T7 246 aa3.87□□□□□ -1.79
VPS13D-214ENST00000620676 OVOL3O00110 214 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 133.2 ms