RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 DSCAML1Q8TD84 2053 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 SHANK2-AS3Q9BTD1 123 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 AGPAT4-IT1Q9H0P7 198 aa7.83□□□□□ -1.16
VPS39-214ENST00000614932 ANKHD1Q8IWZ3 2542 aaKnown RBP7.82□□□□□ -1.16
VPS39-214ENST00000614932 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.82□□□□□ -1.16
VPS39-214ENST00000614932 GATA1P15976 413 aaPredicted RBP7.82□□□□□ -1.16
VPS39-214ENST00000614932 SUB1P53999 127 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS39-214ENST00000614932 NUP37Q8NFH4 326 aa7.82□□□□□ -1.16
VPS39-214ENST00000614932 SPTAN1Q13813 2472 aaKnown RBP7.82□□□□□ -1.16
VPS39-214ENST00000614932 A0A0B4J2C4 111 aa7.82□□□□□ -1.16
VPS39-214ENST00000614932 Q6ZS46 218 aa7.82□□□□□ -1.16
VPS39-214ENST00000614932 RNASE6Q93091 150 aaKnown RBP7.82□□□□□ -1.16
VPS39-214ENST00000614932 TRBV30A0A0K0K1B3 111 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 TMEM178BH3BS89 294 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 HIST1H4AP62805 103 aaKnown RBP7.81□□□□□ -1.16
VPS39-214ENST00000614932 C8orf49Q96NF6 230 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 ARHGAP32A7KAX9 2087 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 MALRD1Q5VYJ5 2156 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 CCL21O00585 134 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 SH2D1AO60880 128 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 C10orf55Q5SWW7 151 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 NEXN-AS1Q8NBZ9 246 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 C9orf85Q96MD7 179 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 DPH3P1Q9H4G8 78 aa7.81□□□□□ -1.16
VPS39-214ENST00000614932 LY6LH3BQJ8 138 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 C10orf105Q8TEF2 133 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 SMCR5Q8TEV8 140 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 BEX4Q9NWD9 120 aaPredicted RBP7.8□□□□□ -1.16
VPS39-214ENST00000614932 MSRB1Q9NZV6 116 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 ABCA1O95477 2261 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 E7EUB6 86 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 NDUFB3O43676 98 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 EIF4EBP3O60516 100 aaPredicted RBP7.8□□□□□ -1.16
VPS39-214ENST00000614932 RNF125Q96EQ8 232 aa7.8□□□□□ -1.16
VPS39-214ENST00000614932 HRNRQ86YZ3 2850 aaPredicted RBP7.8□□□□□ -1.16
VPS39-214ENST00000614932 SAA1P0DJI8 122 aaPredicted RBP7.79□□□□□ -1.16
VPS39-214ENST00000614932 SCGB3A1Q96QR1 104 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 MRPL36Q9P0J6 103 aaKnown RBP7.79□□□□□ -1.16
VPS39-214ENST00000614932 TMEM14CQ9P0S9 112 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 FAM236DA0A1B0GTK5 79 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 FAM236CP0DP71 79 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 UPK3BQ9BT76 320 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 NAV3Q8IVL0 2385 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 ZFHX3Q15911 3703 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 VPS13CQ709C8 3753 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 TRIAP1O43715 76 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 C1orf195Q5TG92 126 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 IL17RELQ6ZVW7 336 aa7.79□□□□□ -1.16
VPS39-214ENST00000614932 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.78□□□□□ -1.16
VPS39-214ENST00000614932 IGHV3-21A0A0B4J1V1 117 aa7.78□□□□□ -1.16
VPS39-214ENST00000614932 TPSG1Q9NRR2 321 aa7.78□□□□□ -1.16
VPS39-214ENST00000614932 NDUFA4L2Q9NRX3 87 aa7.78□□□□□ -1.16
VPS39-214ENST00000614932 COX7A1P24310 79 aa7.78□□□□□ -1.16
VPS39-214ENST00000614932 SERP2Q8N6R1 65 aa7.78□□□□□ -1.16
VPS39-214ENST00000614932 LOXP28300 417 aaPredicted RBP7.77□□□□□ -1.17
VPS39-214ENST00000614932 EEF1AKMT3Q96AZ1 226 aa7.77□□□□□ -1.17
VPS39-214ENST00000614932 CNFNQ9BYD5 112 aa7.77□□□□□ -1.17
VPS39-214ENST00000614932 MAP1AP78559 2803 aaPredicted RBP7.77□□□□□ -1.17
VPS39-214ENST00000614932 EGR2P11161 476 aaPredicted RBP7.77□□□□□ -1.17
VPS39-214ENST00000614932 NSUN5P1Q3KNT7 163 aa7.77□□□□□ -1.17
VPS39-214ENST00000614932 SDIM1Q6ZPB5 146 aa7.77□□□□□ -1.17
VPS39-214ENST00000614932 RPL18AQ02543 176 aaKnown RBP7.76□□□□□ -1.17
VPS39-214ENST00000614932 KLRB1Q12918 225 aa7.76□□□□□ -1.17
VPS39-214ENST00000614932 LINC00311Q8N616 119 aa7.76□□□□□ -1.17
VPS39-214ENST00000614932 PRIMA1Q86XR5 153 aa7.76□□□□□ -1.17
VPS39-214ENST00000614932 TOMM6Q96B49 74 aa7.76□□□□□ -1.17
VPS39-214ENST00000614932 PEMTQ9UBM1 199 aa7.76□□□□□ -1.17
VPS39-214ENST00000614932 TRBV19A0A075B6N1 114 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 TRBV7-1A0A0A6YYK4 115 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 TMEM223A0PJW6 202 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 COX6CP09669 75 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 PRB4P10163 310 aaPredicted RBP7.75□□□□□ -1.17
VPS39-214ENST00000614932 LYPD1Q8N2G4 141 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 NRACQ8N912 160 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 KLK15Q9H2R5 256 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 ITPR1Q14643 2758 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 WNK2Q9Y3S1 2297 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 PLGLAQ15195 96 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 HCP5Q6MZN7 132 aa7.75□□□□□ -1.17
VPS39-214ENST00000614932 C14orf178Q8N769 122 aaPredicted RBP7.75□□□□□ -1.17
VPS39-214ENST00000614932 WT1-ASQ06250 92 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 ORMDL2Q53FV1 153 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 ZNF833PQ6ZTB9 187 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 CELSR1Q9NYQ6 3014 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 SPRY2O43597 315 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 PSMB8P28062 276 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 ADORA2A-AS1P86434 159 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 ERCC8Q13216 396 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 PAPPA-AS1Q5QFB9 102 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 RUSC1-AS1Q66K80 236 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 IGHV1-8P0DP01 117 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 NPC2P61916 151 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 RHOHQ15669 191 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 COX8CQ7Z4L0 72 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 MUSTN1Q8IVN3 82 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 C17orf77Q96MU5 243 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 ICOSQ9Y6W8 199 aa7.74□□□□□ -1.17
VPS39-214ENST00000614932 NDUFC2-KCTD14E9PQ53 114 aa7.73□□□□□ -1.17
VPS39-214ENST00000614932 LST1O00453 97 aa7.73□□□□□ -1.17
VPS39-214ENST00000614932 TSPEAR-AS2P59090 65 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms