RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 SPAG8Q99932 426 aaPredicted RBP8.18□□□□□ -1.1
VPS4B-206ENST00000591475 PRO0461Q9UI25 63 aa8.18□□□□□ -1.1
VPS4B-206ENST00000591475 CCDC168Q8NDH2 2452 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 UNQ9165/PRO28630Q6UXU0 137 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 FAM19A4Q96LR4 140 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 SPATA25Q9BR10 227 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 PGPEP1Q9NXJ5 209 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 SCGB1D4Q6XE38 83 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 APRG1Q8IVJ8 170 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 MRPL16Q9NX20 251 aaKnown RBP8.17□□□□□ -1.1
VPS4B-206ENST00000591475 LINC00527Q9UJ94 153 aa8.17□□□□□ -1.1
VPS4B-206ENST00000591475 CREBBPQ92793 2442 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 IGHV1-69DA0A0B4J2H0 117 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 TRBV7-9A0A0J9YWB2 115 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 LINC01549A6NIU2 74 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 GNRH2O43555 120 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 SMAGPQ0VAQ4 97 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 PAPPA-AS1Q5QFB9 102 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 POM121L12Q8N7R1 296 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 ABCA2Q9BZC7 2435 aa8.16□□□□□ -1.1
VPS4B-206ENST00000591475 CIDEAO60543 219 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 NXPH4O95158 308 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 TRBV12-3P01733 135 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 RNASE3P12724 160 aaKnown RBP8.15□□□□□ -1.1
VPS4B-206ENST00000591475 DEFB1P60022 68 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 HERVK_113P61574 105 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 RPL32P62910 135 aaKnown RBP8.15□□□□□ -1.1
VPS4B-206ENST00000591475 RPL11P62913 178 aaKnown RBP8.15□□□□□ -1.1
VPS4B-206ENST00000591475 SRSF9Q13242 221 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS4B-206ENST00000591475 MTURNQ8N3F0 131 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 MAPK1IP1LQ8NDC0 245 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 WFDC11Q8NEX6 87 aa8.15□□□□□ -1.1
VPS4B-206ENST00000591475 DLX4Q92988 240 aaPredicted RBP8.15□□□□□ -1.1
VPS4B-206ENST00000591475 J3QLI3 93 aa8.15□□□□□ -1.11
VPS4B-206ENST00000591475 DUSP14O95147 198 aaKnown RBP8.15□□□□□ -1.11
VPS4B-206ENST00000591475 TGFAP01135 160 aa8.15□□□□□ -1.11
VPS4B-206ENST00000591475 UBE2D1P51668 147 aa8.15□□□□□ -1.11
VPS4B-206ENST00000591475 PLEKHB2Q96CS7 222 aa8.15□□□□□ -1.11
VPS4B-206ENST00000591475 ZANQ9Y493 2812 aa8.15□□□□□ -1.11
VPS4B-206ENST00000591475 CELSR1Q9NYQ6 3014 aa8.14□□□□□ -1.11
VPS4B-206ENST00000591475 F6UB75 175 aa8.14□□□□□ -1.11
VPS4B-206ENST00000591475 CRYGDP07320 174 aa8.14□□□□□ -1.11
VPS4B-206ENST00000591475 IGHV4-31P0DP07 118 aa8.14□□□□□ -1.11
VPS4B-206ENST00000591475 LCNL1Q6ZST4 164 aa8.14□□□□□ -1.11
VPS4B-206ENST00000591475 USMG5Q96IX5 58 aa8.14□□□□□ -1.11
VPS4B-206ENST00000591475 ITPR3Q14573 2671 aa8.14□□□□□ -1.11
VPS4B-206ENST00000591475 IGHV4OR15-8A0A075B7B6 117 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 A0A087WW49 117 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 C11orf86A6NJI1 115 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 APOMO95445 188 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 NOTCH2Q04721 2471 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 PMVKQ15126 192 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 LYRM7Q5U5X0 104 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 ATP6V0E2Q8NHE4 81 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 TMEM141Q96I45 108 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 TP53TG1Q9Y2A0 90 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 KIF25-AS1Q9Y6Z4 181 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.13□□□□□ -1.113e-6■■■□□ 15.4
VPS4B-206ENST00000591475 IGLV4-69A0A075B6H9 119 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 H3BUA1 57 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 TSPAN13O95857 204 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 ZFP2Q6ZN57 461 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 C1QTNF4Q9BXJ3 329 aa8.13□□□□□ -1.11
VPS4B-206ENST00000591475 PRRC2AP48634 2157 aaKnown RBP8.13□□□□□ -1.11
VPS4B-206ENST00000591475 ZNF469Q96JG9 3925 aaPredicted RBP8.12□□□□□ -1.11
VPS4B-206ENST00000591475 MUC4Q99102 2169 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 IGHV3OR16-10A0A075B7F0 116 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 IGIPA6NJ69 53 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 BRI3O95415 125 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 TSHBP01222 138 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 IGHV1-69P01742 117 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 INSL3P51460 131 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 LINC00315P59091 139 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 CFAP126Q5VTH2 177 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 FAM159AQ6UWV7 190 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 KLHL30-AS1Q8NEE0 82 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 IGKV3-7A0A075B6H7 116 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 LOC107984156A0A0G2JMH3 177 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 VCYO14598 125 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 IGHV3-11P01762 117 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 PSMB2P49721 201 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 POLR2KP53803 58 aaKnown RBP8.12□□□□□ -1.11
VPS4B-206ENST00000591475 FOXI1Q12951 378 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 SUMO4Q6EEV6 95 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 ARL17AQ8IVW1 177 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 KIR2DL4Q99706 377 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 RHPN1-AS1Q9BWJ2 59 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 AKAP9Q99996 3911 aa8.12□□□□□ -1.11
VPS4B-206ENST00000591475 A0A0J9YY99 117 aa8.11□□□□□ -1.11
VPS4B-206ENST00000591475 KLLNB2CW77 178 aa8.11□□□□□ -1.11
VPS4B-206ENST00000591475 CD7P09564 240 aa8.11□□□□□ -1.11
VPS4B-206ENST00000591475 UBE2D3P61077 147 aa8.11□□□□□ -1.11
VPS4B-206ENST00000591475 UBE2D2P62837 147 aa8.11□□□□□ -1.11
VPS4B-206ENST00000591475 TIMM17AQ99595 171 aa8.11□□□□□ -1.11
VPS4B-206ENST00000591475 TEX15Q9BXT5 2789 aa8.11□□□□□ -1.11
VPS4B-206ENST00000591475 AVPP01185 164 aa8.1□□□□□ -1.11
VPS4B-206ENST00000591475 IGHV4-38-2P0DP08 117 aa8.1□□□□□ -1.11
VPS4B-206ENST00000591475 PF4V1P10720 104 aa8.1□□□□□ -1.11
VPS4B-206ENST00000591475 SMCPP49901 116 aaPredicted RBP8.1□□□□□ -1.11
VPS4B-206ENST00000591475 EMP1P54849 157 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 255 ms