RNA–Protein interactions for RNA: ENST00000588687.5

CCDC43-204, Transcript of coiled-coil domain containing 43, humanhuman

TSL 2

Gene CCDC43, Length 721 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-204ENST00000588687 UBE2WQ96B02 151 aa11.95□□□□□ -0.5
CCDC43-204ENST00000588687 AQP10Q96PS8 301 aa11.95□□□□□ -0.5
CCDC43-204ENST00000588687 URGCP-MRPS24S4R325 110 aa11.95□□□□□ -0.5
CCDC43-204ENST00000588687 B4DEV8 164 aa11.94□□□□□ -0.5
CCDC43-204ENST00000588687 ARMS2P0C7Q2 107 aa11.94□□□□□ -0.5
CCDC43-204ENST00000588687 HNRNPA3P51991 378 aaKnown RBP11.94□□□□□ -0.5
CCDC43-204ENST00000588687 SERF2P84101 59 aa11.94□□□□□ -0.5
CCDC43-204ENST00000588687 ZC2HC1AQ96GY0 325 aa11.94□□□□□ -0.5
CCDC43-204ENST00000588687 A0A087WWL8 130 aa11.93□□□□□ -0.5
CCDC43-204ENST00000588687 MBP02144 154 aa11.93□□□□□ -0.5
CCDC43-204ENST00000588687 SEC11BP0C7V7 166 aa11.93□□□□□ -0.5
CCDC43-204ENST00000588687 FAM74A4Q5TZK3 123 aa11.93□□□□□ -0.5
CCDC43-204ENST00000588687 SFRP2Q96HF1 295 aa11.93□□□□□ -0.5
CCDC43-204ENST00000588687 TNFSF18Q9UNG2 199 aa11.93□□□□□ -0.5
CCDC43-204ENST00000588687 PEX7O00628 323 aa11.92□□□□□ -0.5
CCDC43-204ENST00000588687 UBE2D3P61077 147 aa11.92□□□□□ -0.5
CCDC43-204ENST00000588687 UBE2D2P62837 147 aa11.92□□□□□ -0.5
CCDC43-204ENST00000588687 OR11H4Q8NGC9 324 aa11.92□□□□□ -0.5
CCDC43-204ENST00000588687 ACTR3CQ9C0K3 210 aaPredicted RBP11.92□□□□□ -0.5
CCDC43-204ENST00000588687 TNXBP22105 4242 aa11.91□□□□□ -0.5
CCDC43-204ENST00000588687 TRBV10-1A0A0K0K1A3 114 aa11.91□□□□□ -0.5
CCDC43-204ENST00000588687 M0R036 132 aa11.91□□□□□ -0.5
CCDC43-204ENST00000588687 SH2D1AO60880 128 aa11.91□□□□□ -0.5
CCDC43-204ENST00000588687 ENHOQ6UWT2 76 aa11.91□□□□□ -0.5
CCDC43-204ENST00000588687 PLA2G2DQ9UNK4 145 aa11.91□□□□□ -0.5
CCDC43-204ENST00000588687 A0A087WX48 190 aa11.9□□□□□ -0.5
CCDC43-204ENST00000588687 GRIFINA4D1Z8 144 aa11.9□□□□□ -0.5
CCDC43-204ENST00000588687 DAZAP1Q96EP5 407 aaKnown RBP11.9□□□□□ -0.5
CCDC43-204ENST00000588687 FAM74A7A6NL05 159 aa11.89□□□□□ -0.51
CCDC43-204ENST00000588687 Q0VG73 95 aa11.89□□□□□ -0.51
CCDC43-204ENST00000588687 ELOBQ15370 118 aa11.89□□□□□ -0.51
CCDC43-204ENST00000588687 LINC01559Q495D7 138 aa11.89□□□□□ -0.51
CCDC43-204ENST00000588687 OR10G8Q8NGN5 311 aa11.89□□□□□ -0.51
CCDC43-204ENST00000588687 ALG5Q9Y673 324 aa11.89□□□□□ -0.51
CCDC43-204ENST00000588687 LRP2P98164 4655 aa11.89□□□□□ -0.51
CCDC43-204ENST00000588687 TRBV7-3A0A075B6L6 115 aa11.88□□□□□ -0.51
CCDC43-204ENST00000588687 M0R381 172 aa11.88□□□□□ -0.51
CCDC43-204ENST00000588687 UBE2G2P60604 165 aa11.88□□□□□ -0.51
CCDC43-204ENST00000588687 RPL37AP61513 92 aaKnown RBP11.88□□□□□ -0.51
CCDC43-204ENST00000588687 ZNF674Q2M3X9 581 aa11.88□□□□□ -0.51
CCDC43-204ENST00000588687 MPV17L2Q567V2 206 aa11.88□□□□□ -0.51
CCDC43-204ENST00000588687 Q5BKY6 102 aa11.88□□□□□ -0.51
CCDC43-204ENST00000588687 TRBV6-8A0A0A6YYG3 113 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 CTXND1A0A1B0GTU2 59 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 IFNA7P01567 189 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 DEFA1P59665 94 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 DEFA3P59666 94 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 RPL36AP83881 106 aaKnown RBP11.87□□□□□ -0.51
CCDC43-204ENST00000588687 C14orf177Q52M58 125 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 FAM162BQ5T6X4 162 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 RPL36ALQ969Q0 106 aaKnown RBP11.87□□□□□ -0.51
CCDC43-204ENST00000588687 HIST1H2BAQ96A08 127 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 C1orf43Q9BWL3 253 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 PHLDA3Q9Y5J5 127 aa11.87□□□□□ -0.51
CCDC43-204ENST00000588687 USP17L23D6RBM5 183 aa11.86□□□□□ -0.51
CCDC43-204ENST00000588687 MT1HL1P0DM35 61 aa11.86□□□□□ -0.51
CCDC43-204ENST00000588687 RPL7L1Q6DKI1 246 aaKnown RBP11.86□□□□□ -0.51
CCDC43-204ENST00000588687 ZFP82Q8N141 532 aa11.86□□□□□ -0.51
CCDC43-204ENST00000588687 ZFP30Q9Y2G7 519 aa11.86□□□□□ -0.51
CCDC43-204ENST00000588687 PANO1I0J062 215 aa11.85□□□□□ -0.51
CCDC43-204ENST00000588687 PRSS1P07477 247 aa11.85□□□□□ -0.51
CCDC43-204ENST00000588687 TPT1P13693 172 aaKnown RBP11.85□□□□□ -0.51
CCDC43-204ENST00000588687 PRR27Q6MZM9 219 aa11.85□□□□□ -0.51
CCDC43-204ENST00000588687 KRTAP26-1Q6PEX3 210 aa11.85□□□□□ -0.51
CCDC43-204ENST00000588687 C15orf54Q8N8G6 183 aa11.85□□□□□ -0.51
CCDC43-204ENST00000588687 NEXN-AS1Q8NBZ9 246 aa11.85□□□□□ -0.51
CCDC43-204ENST00000588687 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.85□□□□□ -0.51
CCDC43-204ENST00000588687 RNF213Q63HN8 5207 aa11.84□□□□□ -0.51
CCDC43-204ENST00000588687 TMSB15BA0A087X1C1 80 aa11.84□□□□□ -0.51
CCDC43-204ENST00000588687 TRBV6-1A0A0K0K1D8 114 aa11.84□□□□□ -0.51
CCDC43-204ENST00000588687 LTAP01374 205 aa11.84□□□□□ -0.51
CCDC43-204ENST00000588687 FMC1Q96HJ9 113 aa11.84□□□□□ -0.51
CCDC43-204ENST00000588687 NKX6-2Q9C056 277 aaPredicted RBP11.84□□□□□ -0.51
CCDC43-204ENST00000588687 A6NHS1 94 aa11.83□□□□□ -0.52
CCDC43-204ENST00000588687 KCNIP4Q6PIL6 250 aa11.83□□□□□ -0.52
CCDC43-204ENST00000588687 PRR34Q9NV39 138 aa11.83□□□□□ -0.52
CCDC43-204ENST00000588687 HLA-DQA1P01909 254 aa11.82□□□□□ -0.52
CCDC43-204ENST00000588687 CRPP02741 224 aa11.82□□□□□ -0.52
CCDC43-204ENST00000588687 RAB4BP61018 213 aa11.82□□□□□ -0.52
CCDC43-204ENST00000588687 C9orf163Q8N9P6 203 aa11.82□□□□□ -0.52
CCDC43-204ENST00000588687 PTTG1O95997 202 aa11.81□□□□□ -0.52
CCDC43-204ENST00000588687 ANGP03950 147 aaKnown RBP11.81□□□□□ -0.52
CCDC43-204ENST00000588687 MIAQ16674 131 aa11.81□□□□□ -0.52
CCDC43-204ENST00000588687 NTM-AS1Q6ZSK4 140 aa11.81□□□□□ -0.52
CCDC43-204ENST00000588687 OR10AG1Q8NH19 301 aa11.81□□□□□ -0.52
CCDC43-204ENST00000588687 TMEM262E9PQX1 116 aa11.8□□□□□ -0.52
CCDC43-204ENST00000588687 DGAT2L7PQ6IED9 249 aa11.8□□□□□ -0.52
CCDC43-204ENST00000588687 VAX2Q9UIW0 290 aa11.8□□□□□ -0.52
CCDC43-204ENST00000588687 GIPP09681 153 aaPredicted RBP11.79□□□□□ -0.52
CCDC43-204ENST00000588687 UBE2G1P62253 170 aa11.79□□□□□ -0.52
CCDC43-204ENST00000588687 RPL19P84098 196 aaKnown RBP11.79□□□□□ -0.52
CCDC43-204ENST00000588687 CIRBPQ14011 172 aaKnown RBP11.79□□□□□ -0.52
CCDC43-204ENST00000588687 ZNF56Q15929 161 aa11.79□□□□□ -0.52
CCDC43-204ENST00000588687 SDIM1Q6ZPB5 146 aa11.79□□□□□ -0.52
CCDC43-204ENST00000588687 TCEAL7Q9BRU2 100 aa11.79□□□□□ -0.52
CCDC43-204ENST00000588687 MAP1LC3B2A6NCE7 125 aa11.78□□□□□ -0.52
CCDC43-204ENST00000588687 SNAI2O43623 268 aa11.78□□□□□ -0.52
CCDC43-204ENST00000588687 CXCL1P09341 107 aa11.78□□□□□ -0.52
CCDC43-204ENST00000588687 FHITP49789 147 aa11.78□□□□□ -0.52
CCDC43-204ENST00000588687 MAP1LC3BQ9GZQ8 125 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms