RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CDK13Q14004 1512 aaKnown RBP0.36□□□□□ -2.35
SMCHD1-209ENST00000583441 PRG4Q92954 1404 aaPredicted RBP0.36□□□□□ -2.35
SMCHD1-209ENST00000583441 ESPL1Q14674 2120 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 A6NIN4 97 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 PIRTP0C851 137 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 NPC2P61916 151 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 RPL7L1Q6DKI1 246 aaKnown RBP0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 SLC48A1Q6P1K1 146 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 C20orf197Q8N268 126 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 SMIM11BQ8TCY0 68 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 PAIP2BQ9ULR5 123 aaKnown RBP0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 V9GYV3 84 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 BDP1A6H8Y1 2624 aa0.35□□□□□ -2.35
SMCHD1-209ENST00000583441 CASZ1Q86V15 1759 aa0.34□□□□□ -2.35
SMCHD1-209ENST00000583441 NPFFO15130 113 aa0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 IFNA17P01571 189 aa0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 PIPP12273 146 aaPredicted RBP0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 GUCA1AP43080 201 aaPredicted RBP0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 C9orf116Q5BN46 136 aaPredicted RBP0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 TSTD1Q8NFU3 115 aa0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 TCEAL4Q96EI5 215 aa0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 RPRMQ9NS64 109 aa0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 TMEM242Q9NWH2 141 aa0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 RBBP6Q7Z6E9 1792 aaKnown RBP0.34□□□□□ -2.36
SMCHD1-209ENST00000583441 KMT2DO14686 5537 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 TMEM2Q9UHN6 1383 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 FHAD1B1AJZ9 1412 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 A0A087WTM6 91 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 GVQW2A0A096LPI5 108 aaPredicted RBP0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 TRBV7-1A0A0A6YYK4 115 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 APODP05090 189 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 Q6ZUT4 128 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 PFDN5Q99471 154 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 SCP2D1Q9UJQ7 156 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 TNCP24821 2201 aa0.33□□□□□ -2.36
SMCHD1-209ENST00000583441 CACNA1EQ15878 2313 aa0.32□□□□□ -2.36
SMCHD1-209ENST00000583441 SOGA1O94964 1423 aa0.32□□□□□ -2.36
SMCHD1-209ENST00000583441 M0R129 80 aa0.32□□□□□ -2.36
SMCHD1-209ENST00000583441 COPZ1P61923 177 aa0.32□□□□□ -2.36
SMCHD1-209ENST00000583441 ZNF142P52746 1687 aaPredicted RBP0.32□□□□□ -2.36
SMCHD1-209ENST00000583441 TANC1Q9C0D5 1861 aa0.32□□□□□ -2.36
SMCHD1-209ENST00000583441 KDM6BO15054 1643 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 DAPK1P53355 1430 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 PLXNA2O75051 1894 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 PITX3O75364 302 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 IL5P05113 134 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 RPS25P62851 125 aaKnown RBP0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 KCNRGQ8N5I3 272 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 TMEM191AQ9H0A3 160 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 TPT1P8Q9HAU6 139 aa0.31□□□□□ -2.36
SMCHD1-209ENST00000583441 CEP152O94986 1710 aa0.3□□□□□ -2.36
SMCHD1-209ENST00000583441 SPTSSAQ969W0 71 aa0.3□□□□□ -2.36
SMCHD1-209ENST00000583441 Q96NJ1 140 aa0.3□□□□□ -2.36
SMCHD1-209ENST00000583441 ABCA4P78363 2273 aa0.3□□□□□ -2.36
SMCHD1-209ENST00000583441 ADGRB1O14514 1584 aa0.29□□□□□ -2.36
SMCHD1-209ENST00000583441 NDUFB6O95139 128 aa0.29□□□□□ -2.36
SMCHD1-209ENST00000583441 CBLN1P23435 193 aa0.29□□□□□ -2.36
SMCHD1-209ENST00000583441 COX6A2Q02221 97 aa0.29□□□□□ -2.36
SMCHD1-209ENST00000583441 CCDC167Q9P0B6 97 aa0.29□□□□□ -2.36
SMCHD1-209ENST00000583441 LAMC3Q9Y6N6 1575 aa0.28□□□□□ -2.36
SMCHD1-209ENST00000583441 SNCGO76070 127 aa0.28□□□□□ -2.36
SMCHD1-209ENST00000583441 ACYP2P14621 99 aa0.28□□□□□ -2.36
SMCHD1-209ENST00000583441 UBE2G1P62253 170 aa0.28□□□□□ -2.36
SMCHD1-209ENST00000583441 ZNF818PQ6ZRF7 136 aa0.28□□□□□ -2.36
SMCHD1-209ENST00000583441 MAP2P11137 1827 aaKnown RBP0.28□□□□□ -2.36
SMCHD1-209ENST00000583441 JMJD1CQ15652 2540 aa0.28□□□□□ -2.36
SMCHD1-209ENST00000583441 TMEM14DPA8MWL7 114 aa0.27□□□□□ -2.37
SMCHD1-209ENST00000583441 UBE2D1P51668 147 aa0.27□□□□□ -2.37
SMCHD1-209ENST00000583441 EDDM3BP56851 147 aa0.27□□□□□ -2.37
SMCHD1-209ENST00000583441 INSL4Q14641 139 aa0.27□□□□□ -2.37
SMCHD1-209ENST00000583441 Q5BKY6 102 aa0.27□□□□□ -2.37
SMCHD1-209ENST00000583441 NAV2Q8IVL1 2488 aa0.27□□□□□ -2.37
SMCHD1-209ENST00000583441 SPINK1P00995 79 aa0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 NMBP08949 121 aa0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 Q6ZRX8 168 aa0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 C10orf82Q8WW14 230 aa0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 SDF2Q99470 211 aa0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 IBTKQ9P2D0 1353 aaPredicted RBP0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 KIF13AQ9H1H9 1805 aa0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 CDK5RAP2Q96SN8 1893 aa0.26□□□□□ -2.37
SMCHD1-209ENST00000583441 ABCA1O95477 2261 aa0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 VIRMAQ69YN4 1812 aaKnown RBP0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 UNC13BO14795 1591 aa0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 PIGBOS1A0A0B4J2F0 54 aa0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 APOC4-APOC2K7ER74 178 aa0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 GCHFRP30047 84 aa0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 COPS9Q8WXC6 57 aa0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 SYNE2Q8WXH0 6885 aaKnown RBP0.25□□□□□ -2.37
SMCHD1-209ENST00000583441 TRGV1A0A0A0MS02 117 aa0.24□□□□□ -2.37
SMCHD1-209ENST00000583441 SMIM6P0DI80 62 aa0.24□□□□□ -2.37
SMCHD1-209ENST00000583441 CCL8P80075 99 aa0.24□□□□□ -2.37
SMCHD1-209ENST00000583441 S100A12P80511 92 aa0.24□□□□□ -2.37
SMCHD1-209ENST00000583441 WFDC6Q9BQY6 131 aa0.24□□□□□ -2.37
SMCHD1-209ENST00000583441 TNS1Q9HBL0 1735 aaKnown RBP0.24□□□□□ -2.37
SMCHD1-209ENST00000583441 TPRP12270 2363 aaKnown RBP0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 TRBV10-3A0A0K0K1G6 114 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 FAM92AA1XBS5 289 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 ARPC4P59998 168 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 SELENOWP63302 87 aa0.23□□□□□ -2.37
SMCHD1-209ENST00000583441 CCDC58Q4VC31 144 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms