RNA–Protein interactions for RNA: ENST00000581707.1

SREBF1-220, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 695 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-220ENST00000581707 PRR27Q6MZM9 219 aa13.2□□□□□ -0.3
SREBF1-220ENST00000581707 C10orf126Q8N4M7 172 aa13.2□□□□□ -0.3
SREBF1-220ENST00000581707 C14orf178Q8N769 122 aaPredicted RBP13.2□□□□□ -0.3
SREBF1-220ENST00000581707 DERL1Q9BUN8 251 aa13.2□□□□□ -0.3
SREBF1-220ENST00000581707 BOLA1Q9Y3E2 137 aa13.2□□□□□ -0.3
SREBF1-220ENST00000581707 A0A087WWL8 130 aa13.19□□□□□ -0.3
SREBF1-220ENST00000581707 CXCL1P09341 107 aa13.19□□□□□ -0.3
SREBF1-220ENST00000581707 LINC01556Q5JQF7 62 aa13.19□□□□□ -0.3
SREBF1-220ENST00000581707 Q9UF83 564 aa13.19□□□□□ -0.3
SREBF1-220ENST00000581707 IFNA1P01562 189 aa13.18□□□□□ -0.3
SREBF1-220ENST00000581707 LINC00694P0DN24 101 aa13.17□□□□□ -0.3
SREBF1-220ENST00000581707 KRTAP10-2P60368 255 aa13.17□□□□□ -0.3
SREBF1-220ENST00000581707 MEF2BQ02080 365 aaPredicted RBP13.17□□□□□ -0.3
SREBF1-220ENST00000581707 C9orf62Q8N4C0 152 aa13.17□□□□□ -0.3
SREBF1-220ENST00000581707 EREGO14944 169 aa13.16□□□□□ -0.3
SREBF1-220ENST00000581707 PDE6DO43924 150 aa13.16□□□□□ -0.3
SREBF1-220ENST00000581707 ERVFC1-1P60608 527 aa13.16□□□□□ -0.3
SREBF1-220ENST00000581707 CENPWQ5EE01 88 aa13.16□□□□□ -0.3
SREBF1-220ENST00000581707 OR10AG1Q8NH19 301 aa13.15□□□□□ -0.3
SREBF1-220ENST00000581707 SSBP4Q9BWG4 385 aaPredicted RBP13.15□□□□□ -0.3
SREBF1-220ENST00000581707 RAB19A4D1S5 217 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 IBA57-AS1B1ANH7 110 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 SNAI2O43623 268 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 IGHV3-30P01768 117 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 IGHV3-33P01772 117 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 IGHV3-30-3P0DP02 117 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 IGHV3-30-5P0DP03 117 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 BCL2P10415 239 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 VAX2Q9UIW0 290 aa13.14□□□□□ -0.31
SREBF1-220ENST00000581707 IGLV2-8P01709 118 aa13.13□□□□□ -0.31
SREBF1-220ENST00000581707 OR5AL1P0C617 328 aa13.13□□□□□ -0.31
SREBF1-220ENST00000581707 GNG4P50150 75 aa13.13□□□□□ -0.31
SREBF1-220ENST00000581707 DAZAP1Q96EP5 407 aaKnown RBP13.13□□□□□ -0.31
SREBF1-220ENST00000581707 MED9Q9NWA0 146 aa13.13□□□□□ -0.31
SREBF1-220ENST00000581707 A0A087WTM6 91 aa13.12□□□□□ -0.31
SREBF1-220ENST00000581707 A0A087WWC5 75 aa13.12□□□□□ -0.31
SREBF1-220ENST00000581707 MUC21A0A0G2JKD1 596 aa13.12□□□□□ -0.31
SREBF1-220ENST00000581707 MUC21A0A140T8X8 626 aa13.12□□□□□ -0.31
SREBF1-220ENST00000581707 TAGLN2P37802 199 aaKnown RBP13.12□□□□□ -0.31
SREBF1-220ENST00000581707 SPANXN1Q5VSR9 72 aa13.12□□□□□ -0.31
SREBF1-220ENST00000581707 SMIM12Q96EX1 92 aa13.12□□□□□ -0.31
SREBF1-220ENST00000581707 PGPEP1Q9NXJ5 209 aa13.12□□□□□ -0.31
SREBF1-220ENST00000581707 TRBV10-1A0A0K0K1A3 114 aa13.11□□□□□ -0.31
SREBF1-220ENST00000581707 CDK2AP2O75956 126 aa13.11□□□□□ -0.31
SREBF1-220ENST00000581707 SSTP61278 116 aa13.11□□□□□ -0.31
SREBF1-220ENST00000581707 RAB4BP61018 213 aa13.1□□□□□ -0.31
SREBF1-220ENST00000581707 RPL36AP83881 106 aaKnown RBP13.1□□□□□ -0.31
SREBF1-220ENST00000581707 RPL36ALQ969Q0 106 aaKnown RBP13.1□□□□□ -0.31
SREBF1-220ENST00000581707 C19orf71A6NCJ1 209 aa13.09□□□□□ -0.31
SREBF1-220ENST00000581707 RPS20P60866 119 aaKnown RBP13.09□□□□□ -0.31
SREBF1-220ENST00000581707 ZNF56Q15929 161 aa13.09□□□□□ -0.31
SREBF1-220ENST00000581707 ALKAL2Q6UX46 152 aa13.09□□□□□ -0.31
SREBF1-220ENST00000581707 OR2D3Q8NGH3 330 aa13.09□□□□□ -0.31
SREBF1-220ENST00000581707 Q9HAA7 133 aa13.09□□□□□ -0.31
SREBF1-220ENST00000581707 BIN3Q9NQY0 253 aa13.09□□□□□ -0.31
SREBF1-220ENST00000581707 LRP1BQ9NZR2 4599 aa13.09□□□□□ -0.31
SREBF1-220ENST00000581707 TRBV20OR9-2A0A075B6H5 130 aa13.08□□□□□ -0.32
SREBF1-220ENST00000581707 TRBV7-3A0A075B6L6 115 aa13.08□□□□□ -0.32
SREBF1-220ENST00000581707 PSCAO43653 123 aa13.08□□□□□ -0.32
SREBF1-220ENST00000581707 GZMBP10144 247 aa13.08□□□□□ -0.32
SREBF1-220ENST00000581707 BLOC1S1P78537 153 aa13.08□□□□□ -0.32
SREBF1-220ENST00000581707 Q8N3U1 123 aa13.08□□□□□ -0.32
SREBF1-220ENST00000581707 FUSP35637 526 aaKnown RBP eCLIP13.07□□□□□ -0.32
SREBF1-220ENST00000581707 UBE2D3P61077 147 aa13.07□□□□□ -0.32
SREBF1-220ENST00000581707 UBE2D2P62837 147 aa13.07□□□□□ -0.32
SREBF1-220ENST00000581707 LAGE3Q14657 143 aa13.07□□□□□ -0.32
SREBF1-220ENST00000581707 CDPF1Q6NVV7 123 aa13.07□□□□□ -0.32
SREBF1-220ENST00000581707 TPPP3Q9BW30 176 aa13.07□□□□□ -0.32
SREBF1-220ENST00000581707 XKRY2A2RUG3 117 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 RBFOX3A6NFN3 312 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 F5H697 171 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 P01737 135 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 IGLC6P0CF74 106 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 SMIM17P0DL12 118 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 FER1L6-AS1Q8NA97 138 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 OR10G8Q8NGN5 311 aa13.06□□□□□ -0.32
SREBF1-220ENST00000581707 DAZ4Q86SG3 579 aaKnown RBP13.05□□□□□ -0.32
SREBF1-220ENST00000581707 AP1S3Q96PC3 154 aa13.05□□□□□ -0.32
SREBF1-220ENST00000581707 KRTAP17-1Q9BYP8 105 aa13.05□□□□□ -0.32
SREBF1-220ENST00000581707 DAZ3Q9NR90 486 aaKnown RBP13.05□□□□□ -0.32
SREBF1-220ENST00000581707 A0A1B0GVG6 124 aa13.04□□□□□ -0.32
SREBF1-220ENST00000581707 NKX2-5P52952 324 aaPredicted RBP13.04□□□□□ -0.32
SREBF1-220ENST00000581707 NEXN-AS1Q8NBZ9 246 aa13.04□□□□□ -0.32
SREBF1-220ENST00000581707 KIF25-AS1Q9Y6Z4 181 aa13.04□□□□□ -0.32
SREBF1-220ENST00000581707 URGCP-MRPS24S4R325 110 aa13.04□□□□□ -0.32
SREBF1-220ENST00000581707 RYR1P21817 5038 aa13.04□□□□□ -0.32
SREBF1-220ENST00000581707 TRAV8-3A0A0A6YYJ7 113 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 LRCOL1A6NCL2 159 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 F2Z2F3 143 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 CACNG7P62955 275 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 NIT1Q86X76 327 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 LYPD6BQ8NI32 183 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 TM2D2Q9BX73 214 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 HSPG2P98160 4391 aa13.03□□□□□ -0.32
SREBF1-220ENST00000581707 TOR2AQ5JU69 321 aa13.02□□□□□ -0.33
SREBF1-220ENST00000581707 NUDT10Q8NFP7 164 aa13.02□□□□□ -0.33
SREBF1-220ENST00000581707 NUDT11Q96G61 164 aa13.02□□□□□ -0.33
SREBF1-220ENST00000581707 DNAH5Q8TE73 4624 aa13.02□□□□□ -0.33
SREBF1-220ENST00000581707 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.01□□□□□ -0.33
SREBF1-220ENST00000581707 OCC1Q8TAD7 63 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms