RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TMEM238LA0A1B0GVL6 79 aa8.08□□□□□ -1.12
SS18-219ENST00000581570 A0A1W2PPV4 95 aa8.08□□□□□ -1.12
SS18-219ENST00000581570 LYRM1O43325 122 aa8.08□□□□□ -1.12
SS18-219ENST00000581570 RPL36AP83881 106 aaKnown RBP8.08□□□□□ -1.12
SS18-219ENST00000581570 FLI1Q01543 452 aaPredicted RBP8.08□□□□□ -1.12
SS18-219ENST00000581570 MIAQ16674 131 aa8.08□□□□□ -1.12
SS18-219ENST00000581570 MPV17L2Q567V2 206 aa8.08□□□□□ -1.12
SS18-219ENST00000581570 SCGB1C1Q8TD33 95 aa8.08□□□□□ -1.12
SS18-219ENST00000581570 RPL36ALQ969Q0 106 aaKnown RBP8.08□□□□□ -1.12
SS18-219ENST00000581570 IL36BQ9NZH7 164 aa8.08□□□□□ -1.12
SS18-219ENST00000581570 A0A087WWL8 130 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 TRBV6-8A0A0A6YYG3 113 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 TRBV10-1A0A0K0K1A3 114 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 UBE2D3P61077 147 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 UBE2D2P62837 147 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 LRRC37A5PQ49AS3 106 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 C5orf17Q8NAS9 161 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 CLRN3Q8NCR9 226 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 RNF185Q96GF1 192 aa8.07□□□□□ -1.12
SS18-219ENST00000581570 TRBV7-3A0A075B6L6 115 aa8.06□□□□□ -1.12
SS18-219ENST00000581570 H0YIZ8 118 aa8.06□□□□□ -1.12
SS18-219ENST00000581570 H3BVH4 76 aa8.06□□□□□ -1.12
SS18-219ENST00000581570 PHOX2AO14813 284 aa8.06□□□□□ -1.12
SS18-219ENST00000581570 HMGB3O15347 200 aaKnown RBP8.06□□□□□ -1.12
SS18-219ENST00000581570 SAPCD1Q5SSQ6 148 aa8.06□□□□□ -1.12
SS18-219ENST00000581570 OR11H4Q8NGC9 324 aa8.06□□□□□ -1.12
SS18-219ENST00000581570 IGHV3-64A0A075B6Q5 118 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 A0A0J9YXV3 536 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 FABP5P3A8MUU1 101 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 SIX6O95475 246 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 ARMS2P0C7Q2 107 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 CHTF8P0CG12 524 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 CNBPP62633 177 aaKnown RBP8.05□□□□□ -1.12
SS18-219ENST00000581570 KRTAP26-1Q6PEX3 210 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 C7orf33Q8WU49 177 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 SFRP2Q96HF1 295 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 CHCHD5Q9BSY4 110 aa8.05□□□□□ -1.12
SS18-219ENST00000581570 B4DEV8 164 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 KRTAP10-8P60410 259 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 RAB2AP61019 212 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 PKIAP61925 76 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 SUMO1P63165 101 aaKnown RBP8.04□□□□□ -1.12
SS18-219ENST00000581570 WDR73Q6P4I2 378 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 SPACA4Q8TDM5 124 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 SMIM3Q9BZL3 60 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 RBM38Q9H0Z9 239 aaKnown RBP8.04□□□□□ -1.12
SS18-219ENST00000581570 EPDR1Q9UM22 224 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 HSPB11Q9Y547 144 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 KIF25-AS1Q9Y6Z4 181 aa8.04□□□□□ -1.12
SS18-219ENST00000581570 hDV102S1A0JD36 115 aa8.03□□□□□ -1.12
SS18-219ENST00000581570 PTTG1O95997 202 aa8.03□□□□□ -1.12
SS18-219ENST00000581570 ARL14EPLP0DKL9 152 aa8.03□□□□□ -1.12
SS18-219ENST00000581570 CLPSL2Q6UWE3 100 aa8.03□□□□□ -1.12
SS18-219ENST00000581570 OR10G8Q8NGN5 311 aa8.03□□□□□ -1.12
SS18-219ENST00000581570 PRR34Q9NV39 138 aa8.03□□□□□ -1.12
SS18-219ENST00000581570 PLAC8Q9NZF1 115 aa8.03□□□□□ -1.12
SS18-219ENST00000581570 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.02□□□□□ -1.13
SS18-219ENST00000581570 GRIFINA4D1Z8 144 aa8.02□□□□□ -1.13
SS18-219ENST00000581570 DNLZQ5SXM8 178 aa8.02□□□□□ -1.13
SS18-219ENST00000581570 LINC00269Q8N2A0 174 aa8.02□□□□□ -1.13
SS18-219ENST00000581570 AP5S1Q9NUS5 200 aa8.02□□□□□ -1.13
SS18-219ENST00000581570 PHLDA3Q9Y5J5 127 aa8.02□□□□□ -1.13
SS18-219ENST00000581570 TRAV34A0A0B4J273 112 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 SCO2A0A1W2PP80 73 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 KRBOX1C9JBD0 128 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 M0R036 132 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 M0R381 172 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 RBX1P62877 108 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 CYCSP99999 105 aaKnown RBP8.01□□□□□ -1.13
SS18-219ENST00000581570 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.01□□□□□ -1.13
SS18-219ENST00000581570 SUN5Q8TC36 379 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 GTSF1Q8WW33 167 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 ARL2-SNX15V9GYD0 113 aa8.01□□□□□ -1.13
SS18-219ENST00000581570 FAM240BA0A1B0GVZ2 78 aa8□□□□□ -1.13
SS18-219ENST00000581570 SLPIP03973 132 aa8□□□□□ -1.13
SS18-219ENST00000581570 STAG3L2P0CL84 134 aa8□□□□□ -1.13
SS18-219ENST00000581570 STAG3L3P0CL85 134 aa8□□□□□ -1.13
SS18-219ENST00000581570 TPT1P13693 172 aaKnown RBP8□□□□□ -1.13
SS18-219ENST00000581570 GCHFRP30047 84 aa8□□□□□ -1.13
SS18-219ENST00000581570 CDC34P49427 236 aaPredicted RBP8□□□□□ -1.13
SS18-219ENST00000581570 NEXN-AS1Q8NBZ9 246 aa8□□□□□ -1.13
SS18-219ENST00000581570 WFDC1Q9HC57 220 aa8□□□□□ -1.13
SS18-219ENST00000581570 IGLV10-54A0A075B6I4 117 aa7.99□□□□□ -1.13
SS18-219ENST00000581570 RPL12P30050 165 aaKnown RBP7.99□□□□□ -1.13
SS18-219ENST00000581570 CRIP1P50238 77 aa7.99□□□□□ -1.13
SS18-219ENST00000581570 PRR3P79522 188 aaKnown RBP7.99□□□□□ -1.13
SS18-219ENST00000581570 GAGE6Q13070 117 aa7.99□□□□□ -1.13
SS18-219ENST00000581570 REG3GQ6UW15 175 aa7.99□□□□□ -1.13
SS18-219ENST00000581570 ZFP82Q8N141 532 aa7.99□□□□□ -1.13
SS18-219ENST00000581570 PPP1R1CQ8WVI7 109 aa7.99□□□□□ -1.13
SS18-219ENST00000581570 RAB4BP61018 213 aa7.98□□□□□ -1.13
SS18-219ENST00000581570 TMEM97Q5BJF2 176 aa7.98□□□□□ -1.13
SS18-219ENST00000581570 SPINK6Q6UWN8 80 aa7.98□□□□□ -1.13
SS18-219ENST00000581570 NTM-AS1Q6ZSK4 140 aa7.98□□□□□ -1.13
SS18-219ENST00000581570 RAB24Q969Q5 203 aa7.98□□□□□ -1.13
SS18-219ENST00000581570 KRTAP9-2Q9BYQ4 174 aa7.98□□□□□ -1.13
SS18-219ENST00000581570 TMEM167BQ9NRX6 74 aa7.98□□□□□ -1.13
SS18-219ENST00000581570 LPAP08519 4548 aa7.97□□□□□ -1.13
SS18-219ENST00000581570 SH2D1AO60880 128 aa7.97□□□□□ -1.13
SS18-219ENST00000581570 REG3AQ06141 175 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms