RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ZNF56Q15929 161 aa13.36□□□□□ -0.27
SS18-209ENST00000578595 Q6ZSN1 163 aa13.36□□□□□ -0.27
SS18-209ENST00000578595 WFDC10BQ8IUB3 73 aa13.36□□□□□ -0.27
SS18-209ENST00000578595 LY96Q9Y6Y9 160 aa13.36□□□□□ -0.27
SS18-209ENST00000578595 A0A1W2PPQ1 181 aa13.35□□□□□ -0.27
SS18-209ENST00000578595 XKRY2A2RUG3 117 aa13.35□□□□□ -0.27
SS18-209ENST00000578595 ZNF575Q86XF7 245 aa13.35□□□□□ -0.27
SS18-209ENST00000578595 C14orf178Q8N769 122 aaPredicted RBP13.35□□□□□ -0.27
SS18-209ENST00000578595 ATP6V0E2Q8NHE4 81 aa13.35□□□□□ -0.27
SS18-209ENST00000578595 OR10J3Q5JRS4 329 aa13.34□□□□□ -0.27
SS18-209ENST00000578595 FER1L6-AS1Q8NA97 138 aa13.34□□□□□ -0.27
SS18-209ENST00000578595 DNAH2Q9P225 4427 aa13.34□□□□□ -0.27
SS18-209ENST00000578595 TRAV8-6A0A0B4J262 113 aa13.33□□□□□ -0.28
SS18-209ENST00000578595 TMEM250H0YL14 139 aa13.33□□□□□ -0.28
SS18-209ENST00000578595 SNAI2O43623 268 aa13.33□□□□□ -0.28
SS18-209ENST00000578595 OR5AL1P0C617 328 aa13.33□□□□□ -0.28
SS18-209ENST00000578595 SMIM17P0DL12 118 aa13.33□□□□□ -0.28
SS18-209ENST00000578595 LYPD6BQ8NI32 183 aa13.33□□□□□ -0.28
SS18-209ENST00000578595 TRAV9-2A0A087WT02 112 aa13.32□□□□□ -0.28
SS18-209ENST00000578595 C19orf71A6NCJ1 209 aa13.32□□□□□ -0.28
SS18-209ENST00000578595 EVI2AP22794 236 aa13.32□□□□□ -0.28
SS18-209ENST00000578595 UFSP1Q6NVU6 142 aa13.32□□□□□ -0.28
SS18-209ENST00000578595 F5H697 171 aa13.31□□□□□ -0.28
SS18-209ENST00000578595 CRYGDP07320 174 aa13.31□□□□□ -0.28
SS18-209ENST00000578595 FAM210AQ96ND0 272 aa13.31□□□□□ -0.28
SS18-209ENST00000578595 AP1S3Q96PC3 154 aa13.31□□□□□ -0.28
SS18-209ENST00000578595 LINC00315P59091 139 aa13.3□□□□□ -0.28
SS18-209ENST00000578595 TNP2Q05952 138 aa13.3□□□□□ -0.28
SS18-209ENST00000578595 OCC1Q8TAD7 63 aa13.3□□□□□ -0.28
SS18-209ENST00000578595 SSBP4Q9BWG4 385 aaPredicted RBP13.3□□□□□ -0.28
SS18-209ENST00000578595 RNASE7Q9H1E1 156 aaKnown RBP13.3□□□□□ -0.28
SS18-209ENST00000578595 GTSF1LQ9H1H1 148 aa13.3□□□□□ -0.28
SS18-209ENST00000578595 MGPP08493 103 aa13.29□□□□□ -0.28
SS18-209ENST00000578595 NUDT10Q8NFP7 164 aa13.29□□□□□ -0.28
SS18-209ENST00000578595 NUDT11Q96G61 164 aa13.29□□□□□ -0.28
SS18-209ENST00000578595 SMIM7Q9BQ49 75 aa13.29□□□□□ -0.28
SS18-209ENST00000578595 RPP21Q9H633 154 aaKnown RBP13.29□□□□□ -0.28
SS18-209ENST00000578595 DNAH17Q9UFH2 4485 aa13.29□□□□□ -0.28
SS18-209ENST00000578595 K7EN84 100 aa13.28□□□□□ -0.28
SS18-209ENST00000578595 TIRAPP58753 221 aa13.28□□□□□ -0.28
SS18-209ENST00000578595 RPL36AP83881 106 aaKnown RBP13.28□□□□□ -0.28
SS18-209ENST00000578595 LELP1Q5T871 98 aa13.28□□□□□ -0.28
SS18-209ENST00000578595 TEX261Q6UWH6 196 aa13.28□□□□□ -0.28
SS18-209ENST00000578595 RPL36ALQ969Q0 106 aaKnown RBP13.28□□□□□ -0.28
SS18-209ENST00000578595 Q9UF83 564 aa13.28□□□□□ -0.28
SS18-209ENST00000578595 IGHV3-38A0A0C4DH36 116 aa13.27□□□□□ -0.29
SS18-209ENST00000578595 IGLC6P0CF74 106 aa13.27□□□□□ -0.29
SS18-209ENST00000578595 RAB4BP61018 213 aa13.27□□□□□ -0.29
SS18-209ENST00000578595 CACNG7P62955 275 aa13.27□□□□□ -0.29
SS18-209ENST00000578595 BIRC6Q9NR09 4857 aa13.27□□□□□ -0.29
SS18-209ENST00000578595 A0A1B0GVY2 172 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 ZNF727A8MUV8 499 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 IGHV3-30P01768 117 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 IGHV3-33P01772 117 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 DNAH10OSP0CZ25 163 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 IGHV3-30-3P0DP02 117 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 IGHV3-30-5P0DP03 117 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 LYZL1Q6UWQ5 148 aa13.26□□□□□ -0.29
SS18-209ENST00000578595 FAT2Q9NYQ8 4349 aa13.25□□□□□ -0.29
SS18-209ENST00000578595 F2Z2F3 143 aa13.25□□□□□ -0.29
SS18-209ENST00000578595 GATCO43716 136 aaKnown RBP13.25□□□□□ -0.29
SS18-209ENST00000578595 SRP19P09132 144 aaKnown RBP13.25□□□□□ -0.29
SS18-209ENST00000578595 LINC00694P0DN24 101 aa13.25□□□□□ -0.29
SS18-209ENST00000578595 C10orf126Q8N4M7 172 aa13.25□□□□□ -0.29
SS18-209ENST00000578595 TNFRSF18Q9Y5U5 241 aa13.25□□□□□ -0.29
SS18-209ENST00000578595 HECTD4Q9Y4D8 3996 aa13.24□□□□□ -0.29
SS18-209ENST00000578595 TRBV10-1A0A0K0K1A3 114 aa13.24□□□□□ -0.29
SS18-209ENST00000578595 ERVFC1-1P60608 527 aa13.24□□□□□ -0.29
SS18-209ENST00000578595 MSRB1Q9NZV6 116 aa13.24□□□□□ -0.29
SS18-209ENST00000578595 TRGC1P0CF51 173 aa13.23□□□□□ -0.29
SS18-209ENST00000578595 BTF3P20290 206 aaKnown RBP13.23□□□□□ -0.29
SS18-209ENST00000578595 NFE4Q86UQ8 179 aa13.23□□□□□ -0.29
SS18-209ENST00000578595 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.23□□□□□ -0.29
SS18-209ENST00000578595 TRBV7-3A0A075B6L6 115 aa13.22□□□□□ -0.29
SS18-209ENST00000578595 A0A087WWC5 75 aa13.22□□□□□ -0.29
SS18-209ENST00000578595 K7EP13 123 aa13.22□□□□□ -0.29
SS18-209ENST00000578595 LINC01556Q5JQF7 62 aa13.22□□□□□ -0.29
SS18-209ENST00000578595 Q9HAA7 133 aa13.22□□□□□ -0.29
SS18-209ENST00000578595 CTRLP40313 264 aa13.21□□□□□ -0.29
SS18-209ENST00000578595 TWIST1Q15672 202 aa13.21□□□□□ -0.29
SS18-209ENST00000578595 URGCP-MRPS24S4R325 110 aa13.21□□□□□ -0.29
SS18-209ENST00000578595 NTF3P20783 257 aa13.2□□□□□ -0.3
SS18-209ENST00000578595 PEA15Q15121 130 aa13.2□□□□□ -0.3
SS18-209ENST00000578595 NEXN-AS1Q8NBZ9 246 aa13.2□□□□□ -0.3
SS18-209ENST00000578595 A8MWL6 223 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 H7C1H1 209 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 NDUFS6O75380 124 aaKnown RBP13.19□□□□□ -0.3
SS18-209ENST00000578595 UBE2D3P61077 147 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 UBE2D2P62837 147 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 FAM231DQ6ZW35 169 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 LINC01551Q86U37 167 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 BORCS7Q96B45 105 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 KIF25-AS1Q9Y6Z4 181 aa13.19□□□□□ -0.3
SS18-209ENST00000578595 PSCAO43653 123 aa13.18□□□□□ -0.3
SS18-209ENST00000578595 KCNIP4Q6PIL6 250 aa13.18□□□□□ -0.3
SS18-209ENST00000578595 SMIM15Q7Z3B0 74 aa13.18□□□□□ -0.3
SS18-209ENST00000578595 OR10G8Q8NGN5 311 aa13.18□□□□□ -0.3
SS18-209ENST00000578595 PGLYRP4Q96LB8 373 aa13.18□□□□□ -0.3
SS18-209ENST00000578595 DPH3P1Q9H4G8 78 aa13.18□□□□□ -0.3
SS18-209ENST00000578595 EREGO14944 169 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms