RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 C10orf82Q8WW14 230 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 TEX37Q96LM6 180 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 MCEEQ96PE7 176 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 RTL8AQ9BWD3 113 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 TMEM133Q9H2Q1 129 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 OSTCQ9NRP0 149 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 TXNL4BQ9NX01 149 aaKnown RBP3.36□□□□□ -1.87
VPS53-219ENST00000576019 MED31Q9Y3C7 131 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 MINOS1-NBL1R4GNA1 71 aa3.36□□□□□ -1.87
VPS53-219ENST00000576019 MACF1Q9UPN3 7388 aaKnown RBP3.35□□□□□ -1.87
VPS53-219ENST00000576019 TRAV36DV7A0A075B6V5 113 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 ODAMA1E959 279 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 H3BPC8 53 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 OR1I1O60431 355 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 CREBL2O60519 120 aaPredicted RBP3.35□□□□□ -1.87
VPS53-219ENST00000576019 IGKV1-16P04430 117 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 BCL2P10415 239 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 FKBP2P26885 142 aaKnown RBP3.35□□□□□ -1.87
VPS53-219ENST00000576019 RPL28P46779 137 aaKnown RBP3.35□□□□□ -1.87
VPS53-219ENST00000576019 DNAJB13P59910 316 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 YPEL3P61236 119 aaPredicted RBP3.35□□□□□ -1.87
VPS53-219ENST00000576019 KRTAP20-1Q3LI63 56 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 NCBP2-AS2Q69YL0 99 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 LINC00322Q6ZN03 302 aaPredicted RBP3.35□□□□□ -1.87
VPS53-219ENST00000576019 MIR17HGQ75NE6 70 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 TMEM229BQ8NBD8 167 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 OR51T1Q8NGJ9 327 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 TMEM126AQ9H061 195 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 OTORQ9NRC9 128 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 COA4Q9NYJ1 87 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 USH2AO75445 5202 aa3.35□□□□□ -1.87
VPS53-219ENST00000576019 IGLV3-9A0A075B6K5 115 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 A0A087X0T9 212 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 IGKV1-9A0A0C4DH69 117 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 TRDV1A0A1B0GX56 115 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 TMEM189A5PLL7 270 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 C1QCP02747 245 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 DNAH10OSP0CZ25 163 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 DEFA4P12838 97 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 FOXF1Q12946 379 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 MSMO1Q15800 293 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 DNLZQ5SXM8 178 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 BCL2L15Q5TBC7 163 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 HIST3H2BBQ8N257 126 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 OR4C16Q8NGL9 310 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 C1orf54Q8WWF1 131 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 GINS4Q9BRT9 223 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 GGACTQ9BVM4 153 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 YIPF3Q9GZM5 350 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 DUSP21Q9H596 190 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 SPANXCQ9NY87 97 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 HSPB8Q9UJY1 196 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 R4GN34 69 aa3.34□□□□□ -1.87
VPS53-219ENST00000576019 IGLV3-32A0A0A0MS00 114 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 A0A1B0GX51 115 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 C11orf86A6NJI1 115 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 GABARAPH6UMI1 98 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 TMEM256-PLSCR3K7ERE1 68 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 OVOL1O14753 267 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 NPFFO15130 113 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 ZNF728P0DKX0 622 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 CD24P25063 80 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 SUPT4H1P63272 117 aaKnown RBP3.33□□□□□ -1.88
VPS53-219ENST00000576019 SLC38A11Q08AI6 406 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 EBI3Q14213 229 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 C1orf140Q5VVS0 124 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 RNF182Q8N6D2 247 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 SCGB3A1Q96QR1 104 aa3.33□□□□□ -1.88
VPS53-219ENST00000576019 SLC25A21Q9BQT8 299 aaPredicted RBP3.33□□□□□ -1.88
VPS53-219ENST00000576019 DNAH8Q96JB1 4490 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 BORCS7-ASMTA0A0B4J1R7 106 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 C9orf170A2RU37 121 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 H3BSH0 61 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 MRPL33O75394 65 aaKnown RBP3.32□□□□□ -1.88
VPS53-219ENST00000576019 CXCL1P09341 107 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 MT1HL1P0DM35 61 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 BLCAPP62952 87 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 KRTAP11-1Q8IUC1 163 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 OR8B3Q8NGG8 313 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 VPS25Q9BRG1 176 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 OR2H1Q9GZK4 316 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 TMEM106BQ9NUM4 274 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 COPZ2Q9P299 210 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 NAT8BQ9UHF3 227 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 RNF11Q9Y3C5 154 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 GPR98Q8WXG9 6306 aa3.32□□□□□ -1.88
VPS53-219ENST00000576019 IGLV4-60A0A075B6I1 120 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 TMEM235A6NFC5 223 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 TMEM212A6NML5 194 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 C5orf58C9J3I9 102 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 SLC22A1O15245 554 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 DBIP07108 87 aaKnown RBP3.31□□□□□ -1.88
VPS53-219ENST00000576019 SMIM6P0DI80 62 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 LGALS3P17931 250 aaKnown RBP3.31□□□□□ -1.88
VPS53-219ENST00000576019 TMBIM6P55061 237 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 UBE2BP63146 152 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 RHOGP84095 191 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 MOBPQ13875 183 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 SPRNQ5BIV9 151 aa3.31□□□□□ -1.88
VPS53-219ENST00000576019 AMMECR1LQ6DCA0 310 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms