RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 MRPL23Q16540 153 aaKnown RBP10.92□□□□□ -0.66
CHD3-215ENST00000572750 UFSP1Q6NVU6 142 aa10.92□□□□□ -0.66
CHD3-215ENST00000572750 ZFP2Q6ZN57 461 aa10.92□□□□□ -0.66
CHD3-215ENST00000572750 Q6ZSN1 163 aa10.92□□□□□ -0.66
CHD3-215ENST00000572750 SFRP2Q96HF1 295 aa10.92□□□□□ -0.66
CHD3-215ENST00000572750 SSBP4Q9BWG4 385 aaPredicted RBP10.92□□□□□ -0.66
CHD3-215ENST00000572750 RPP21Q9H633 154 aaKnown RBP10.92□□□□□ -0.66
CHD3-215ENST00000572750 CIDEAO60543 219 aa10.91□□□□□ -0.66
CHD3-215ENST00000572750 PEA15Q15121 130 aa10.91□□□□□ -0.66
CHD3-215ENST00000572750 RHOHQ15669 191 aa10.91□□□□□ -0.66
CHD3-215ENST00000572750 SPANXN1Q5VSR9 72 aa10.91□□□□□ -0.66
CHD3-215ENST00000572750 LINC01551Q86U37 167 aa10.91□□□□□ -0.66
CHD3-215ENST00000572750 FER1L6-AS1Q8NA97 138 aa10.91□□□□□ -0.66
CHD3-215ENST00000572750 ZNRF2Q8NHG8 242 aa10.91□□□□□ -0.66
CHD3-215ENST00000572750 TRBV6-4A0A1B0GX49 114 aa10.9□□□□□ -0.66
CHD3-215ENST00000572750 XKRY2A2RUG3 117 aa10.9□□□□□ -0.66
CHD3-215ENST00000572750 M0R2N4 97 aa10.9□□□□□ -0.66
CHD3-215ENST00000572750 RHODO00212 210 aa10.9□□□□□ -0.66
CHD3-215ENST00000572750 FAM3BP58499 235 aaPredicted RBP10.9□□□□□ -0.66
CHD3-215ENST00000572750 RAB14P61106 215 aa10.9□□□□□ -0.66
CHD3-215ENST00000572750 IFITM2Q01629 132 aa10.9□□□□□ -0.66
CHD3-215ENST00000572750 MRPS16Q9Y3D3 137 aaKnown RBP10.9□□□□□ -0.66
CHD3-215ENST00000572750 LY96Q9Y6Y9 160 aa10.9□□□□□ -0.66
CHD3-215ENST00000572750 DNAH11Q96DT5 4516 aa10.89□□□□□ -0.67
CHD3-215ENST00000572750 CRYGDP07320 174 aa10.89□□□□□ -0.67
CHD3-215ENST00000572750 NEGR1Q7Z3B1 354 aa10.89□□□□□ -0.67
CHD3-215ENST00000572750 C14orf178Q8N769 122 aaPredicted RBP10.89□□□□□ -0.67
CHD3-215ENST00000572750 PRADC1Q9BSG0 188 aa10.89□□□□□ -0.67
CHD3-215ENST00000572750 PKD1P98161 4303 aa10.88□□□□□ -0.67
CHD3-215ENST00000572750 CTRLP40313 264 aa10.88□□□□□ -0.67
CHD3-215ENST00000572750 ERVFC1-1P60608 527 aa10.88□□□□□ -0.67
CHD3-215ENST00000572750 FAM231DQ6ZW35 169 aa10.88□□□□□ -0.67
CHD3-215ENST00000572750 HSPG2P98160 4391 aa10.88□□□□□ -0.67
CHD3-215ENST00000572750 DNAH17Q9UFH2 4485 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 GATCO43716 136 aaKnown RBP10.87□□□□□ -0.67
CHD3-215ENST00000572750 FAM74A3Q4VXF1 159 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 CLLU1Q5K131 121 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 LYPD5Q6UWN5 251 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 LYZL1Q6UWQ5 148 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 AP1S3Q96PC3 154 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 UPK3BQ9BT76 320 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 SMDT1Q9H4I9 107 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 Q9UF83 564 aa10.87□□□□□ -0.67
CHD3-215ENST00000572750 A0A1W2PPQ1 181 aa10.86□□□□□ -0.67
CHD3-215ENST00000572750 ADIRFQ15847 76 aa10.86□□□□□ -0.67
CHD3-215ENST00000572750 ZNF56Q15929 161 aa10.86□□□□□ -0.67
CHD3-215ENST00000572750 GTSF1Q8WW33 167 aa10.86□□□□□ -0.67
CHD3-215ENST00000572750 MSRB1Q9NZV6 116 aa10.86□□□□□ -0.67
CHD3-215ENST00000572750 GAGE12JA6NER3 117 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 LINC00694P0DN24 101 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 RPL23P62829 140 aaKnown RBP10.85□□□□□ -0.67
CHD3-215ENST00000572750 CACNG7P62955 275 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 GAGE1Q13065 139 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 GAGE4Q13068 117 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 GAGE5Q13069 117 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 TMEM241Q24JQ0 296 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 GAGE13Q4V321 117 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 Q6ZR54 194 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 ISOC2Q96AB3 205 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 NAT8Q9UHE5 227 aa10.85□□□□□ -0.67
CHD3-215ENST00000572750 F2Z2F3 143 aa10.84□□□□□ -0.67
CHD3-215ENST00000572750 CT83Q5H943 113 aa10.84□□□□□ -0.67
CHD3-215ENST00000572750 SOHLH1Q5JUK2 328 aa10.84□□□□□ -0.67
CHD3-215ENST00000572750 Q9H8V8 135 aa10.84□□□□□ -0.67
CHD3-215ENST00000572750 NBDYA0A0U1RRE5 68 aa10.83□□□□□ -0.68
CHD3-215ENST00000572750 SMIM17P0DL12 118 aa10.83□□□□□ -0.68
CHD3-215ENST00000572750 SH2D6Q7Z4S9 175 aa10.83□□□□□ -0.68
CHD3-215ENST00000572750 KRTAP1-5Q9BYS1 174 aa10.83□□□□□ -0.68
CHD3-215ENST00000572750 OSTCQ9NRP0 149 aa10.83□□□□□ -0.68
CHD3-215ENST00000572750 KIF25-AS1Q9Y6Z4 181 aa10.83□□□□□ -0.68
CHD3-215ENST00000572750 A8MWL6 223 aa10.82□□□□□ -0.68
CHD3-215ENST00000572750 MGPP08493 103 aa10.82□□□□□ -0.68
CHD3-215ENST00000572750 NTF3P20783 257 aa10.82□□□□□ -0.68
CHD3-215ENST00000572750 RAB4BP61018 213 aa10.82□□□□□ -0.68
CHD3-215ENST00000572750 WFDC10BQ8IUB3 73 aa10.82□□□□□ -0.68
CHD3-215ENST00000572750 C15orf54Q8N8G6 183 aa10.82□□□□□ -0.68
CHD3-215ENST00000572750 CNFNQ9BYD5 112 aa10.82□□□□□ -0.68
CHD3-215ENST00000572750 F5H697 171 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 SIVA1O15304 175 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 EVI2AP22794 236 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 LINC00315P59091 139 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 TWIST1Q15672 202 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 ATP6V0E2Q8NHE4 81 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 PGLYRP4Q96LB8 373 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 V9GYV3 84 aa10.81□□□□□ -0.68
CHD3-215ENST00000572750 TRGC1P0CF51 173 aa10.8□□□□□ -0.68
CHD3-215ENST00000572750 TSKUQ8WUA8 353 aa10.8□□□□□ -0.68
CHD3-215ENST00000572750 TRBV10-1A0A0K0K1A3 114 aa10.79□□□□□ -0.68
CHD3-215ENST00000572750 HIGD1CA8MV81 97 aa10.79□□□□□ -0.68
CHD3-215ENST00000572750 TIRAPP58753 221 aa10.79□□□□□ -0.68
CHD3-215ENST00000572750 TTC32Q5I0X7 151 aa10.79□□□□□ -0.68
CHD3-215ENST00000572750 WDR73Q6P4I2 378 aa10.79□□□□□ -0.68
CHD3-215ENST00000572750 NEXN-AS1Q8NBZ9 246 aa10.79□□□□□ -0.68
CHD3-215ENST00000572750 GTSF1LQ9H1H1 148 aa10.79□□□□□ -0.68
CHD3-215ENST00000572750 RTL8CO15255 209 aa10.78□□□□□ -0.68
CHD3-215ENST00000572750 RPL36AP83881 106 aaKnown RBP10.78□□□□□ -0.68
CHD3-215ENST00000572750 SUMO4Q6EEV6 95 aa10.78□□□□□ -0.68
CHD3-215ENST00000572750 OR10G8Q8NGN5 311 aa10.78□□□□□ -0.68
CHD3-215ENST00000572750 RPL36ALQ969Q0 106 aaKnown RBP10.78□□□□□ -0.68
CHD3-215ENST00000572750 GFRA4Q9GZZ7 299 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms