RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 UBE2D3P61077 147 aa12.3□□□□□ -0.44
NUP88-203ENST00000572019 UBE2D2P62837 147 aa12.3□□□□□ -0.44
NUP88-203ENST00000572019 MPV17L2Q567V2 206 aa12.3□□□□□ -0.44
NUP88-203ENST00000572019 SAPCD1Q5SSQ6 148 aa12.3□□□□□ -0.44
NUP88-203ENST00000572019 C15orf54Q8N8G6 183 aa12.3□□□□□ -0.44
NUP88-203ENST00000572019 C1orf43Q9BWL3 253 aa12.3□□□□□ -0.44
NUP88-203ENST00000572019 FABP5P3A8MUU1 101 aa12.29□□□□□ -0.44
NUP88-203ENST00000572019 RHODO00212 210 aa12.29□□□□□ -0.44
NUP88-203ENST00000572019 HLA-DQA1P01909 254 aa12.29□□□□□ -0.44
NUP88-203ENST00000572019 ZC2HC1AQ96GY0 325 aa12.29□□□□□ -0.44
NUP88-203ENST00000572019 SFRP2Q96HF1 295 aa12.29□□□□□ -0.44
NUP88-203ENST00000572019 CHCHD7Q9BUK0 85 aa12.29□□□□□ -0.44
NUP88-203ENST00000572019 SEC11BP0C7V7 166 aa12.28□□□□□ -0.44
NUP88-203ENST00000572019 PET100P0DJ07 73 aa12.28□□□□□ -0.44
NUP88-203ENST00000572019 DNLZQ5SXM8 178 aa12.28□□□□□ -0.44
NUP88-203ENST00000572019 Q86TA4 180 aa12.28□□□□□ -0.44
NUP88-203ENST00000572019 OR11H4Q8NGC9 324 aa12.28□□□□□ -0.44
NUP88-203ENST00000572019 TMEM262E9PQX1 116 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 M0R381 172 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 SSNA1O43805 119 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 UPK1BO75841 260 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 ATP6V0CP27449 155 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 Q0VG73 95 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 ODF1Q14990 250 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 ELOBQ15370 118 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 C14orf177Q52M58 125 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 KRTAP26-1Q6PEX3 210 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 MARVELD1Q9BSK0 173 aa12.27□□□□□ -0.45
NUP88-203ENST00000572019 TMSB15BA0A087X1C1 80 aa12.26□□□□□ -0.45
NUP88-203ENST00000572019 SH2D1AO60880 128 aa12.26□□□□□ -0.45
NUP88-203ENST00000572019 C9orf163Q8N9P6 203 aa12.26□□□□□ -0.45
NUP88-203ENST00000572019 RNF213Q63HN8 5207 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 TRBV7-3A0A075B6L6 115 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 TRBV6-8A0A0A6YYG3 113 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 CXorf1O96002 111 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 UBE2G2P60604 165 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 ZNF726P1Q15940 193 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 CLPSL2Q6UWE3 100 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 SDIM1Q6ZPB5 146 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 TMEM167BQ9NRX6 74 aa12.25□□□□□ -0.45
NUP88-203ENST00000572019 ANGP03950 147 aaKnown RBP12.24□□□□□ -0.45
NUP88-203ENST00000572019 RPL36AP83881 106 aaKnown RBP12.24□□□□□ -0.45
NUP88-203ENST00000572019 RPL36ALQ969Q0 106 aaKnown RBP12.24□□□□□ -0.45
NUP88-203ENST00000572019 PSMG3Q9BT73 122 aaPredicted RBP12.24□□□□□ -0.45
NUP88-203ENST00000572019 TRBV10-1A0A0K0K1A3 114 aa12.23□□□□□ -0.45
NUP88-203ENST00000572019 A0A1W2PRE2 83 aa12.23□□□□□ -0.45
NUP88-203ENST00000572019 PEX7O00628 323 aa12.23□□□□□ -0.45
NUP88-203ENST00000572019 CRPP02741 224 aa12.23□□□□□ -0.45
NUP88-203ENST00000572019 KCNIP4Q6PIL6 250 aa12.23□□□□□ -0.45
NUP88-203ENST00000572019 NEXN-AS1Q8NBZ9 246 aa12.23□□□□□ -0.45
NUP88-203ENST00000572019 PHLDA3Q9Y5J5 127 aa12.23□□□□□ -0.45
NUP88-203ENST00000572019 IFNA7P01567 189 aa12.22□□□□□ -0.45
NUP88-203ENST00000572019 NTM-AS1Q6ZSK4 140 aa12.22□□□□□ -0.45
NUP88-203ENST00000572019 OR10G8Q8NGN5 311 aa12.22□□□□□ -0.45
NUP88-203ENST00000572019 PTTG1O95997 202 aa12.21□□□□□ -0.45
NUP88-203ENST00000572019 TPT1P13693 172 aaKnown RBP12.21□□□□□ -0.45
NUP88-203ENST00000572019 DGAT2L7PQ6IED9 249 aa12.21□□□□□ -0.45
NUP88-203ENST00000572019 Q6ZRU5 148 aa12.21□□□□□ -0.45
NUP88-203ENST00000572019 ACTR3CQ9C0K3 210 aaPredicted RBP12.21□□□□□ -0.45
NUP88-203ENST00000572019 CHTF8P0CG12 524 aa12.2□□□□□ -0.46
NUP88-203ENST00000572019 S100ZQ8WXG8 99 aa12.2□□□□□ -0.46
NUP88-203ENST00000572019 FAM74A7A6NL05 159 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 DEFA3P59666 94 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 CIRBPQ14011 172 aaKnown RBP12.19□□□□□ -0.46
NUP88-203ENST00000572019 ZNF674Q2M3X9 581 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 LINC01559Q495D7 138 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 FAM162BQ5T6X4 162 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 PRR27Q6MZM9 219 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 COX8CQ7Z4L0 72 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 ZFP82Q8N141 532 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 CHCHD5Q9BSY4 110 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 PRR34Q9NV39 138 aa12.19□□□□□ -0.46
NUP88-203ENST00000572019 SLPIP03973 132 aa12.18□□□□□ -0.46
NUP88-203ENST00000572019 SERF2P84101 59 aa12.18□□□□□ -0.46
NUP88-203ENST00000572019 MIAQ16674 131 aa12.18□□□□□ -0.46
NUP88-203ENST00000572019 Q5BKY6 102 aa12.18□□□□□ -0.46
NUP88-203ENST00000572019 LINC00299Q6ZSB3 139 aa12.18□□□□□ -0.46
NUP88-203ENST00000572019 NDUFA13Q9P0J0 144 aa12.18□□□□□ -0.46
NUP88-203ENST00000572019 TNFSF18Q9UNG2 199 aa12.18□□□□□ -0.46
NUP88-203ENST00000572019 MBP02144 154 aa12.17□□□□□ -0.46
NUP88-203ENST00000572019 RBX1P62877 108 aa12.17□□□□□ -0.46
NUP88-203ENST00000572019 RPL19P84098 196 aaKnown RBP12.17□□□□□ -0.46
NUP88-203ENST00000572019 GAGE6Q13070 117 aa12.17□□□□□ -0.46
NUP88-203ENST00000572019 ZNF56Q15929 161 aa12.17□□□□□ -0.46
NUP88-203ENST00000572019 LINC00269Q8N2A0 174 aa12.17□□□□□ -0.46
NUP88-203ENST00000572019 OR10AG1Q8NH19 301 aa12.17□□□□□ -0.46
NUP88-203ENST00000572019 MUC21A0A0G2JKD1 596 aa12.16□□□□□ -0.46
NUP88-203ENST00000572019 MUC21A0A140T8X8 626 aa12.16□□□□□ -0.46
NUP88-203ENST00000572019 RAB4BP61018 213 aa12.16□□□□□ -0.46
NUP88-203ENST00000572019 AQP10Q96PS8 301 aa12.16□□□□□ -0.46
NUP88-203ENST00000572019 IGLV10-54A0A075B6I4 117 aa12.15□□□□□ -0.46
NUP88-203ENST00000572019 RPL7L1Q6DKI1 246 aaKnown RBP12.15□□□□□ -0.46
NUP88-203ENST00000572019 A0A087WYN8 130 aa12.14□□□□□ -0.47
NUP88-203ENST00000572019 A0A0D9SG52 128 aa12.14□□□□□ -0.47
NUP88-203ENST00000572019 HIST1H2BAQ96A08 127 aa12.14□□□□□ -0.47
NUP88-203ENST00000572019 ZFP30Q9Y2G7 519 aa12.14□□□□□ -0.47
NUP88-203ENST00000572019 CTXND1A0A1B0GTU2 59 aa12.13□□□□□ -0.47
NUP88-203ENST00000572019 LTAP01374 205 aa12.13□□□□□ -0.47
NUP88-203ENST00000572019 ALG5Q9Y673 324 aa12.13□□□□□ -0.47
NUP88-203ENST00000572019 CNBPP62633 177 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms