RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 ISOC2Q96AB3 205 aa15.27■□□□□ 0.04
CLN3-234ENST00000568472 JPT2Q9H910 190 aa15.27■□□□□ 0.04
CLN3-234ENST00000568472 FAM231BA6NCW3 169 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 GYPEP15421 78 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 CTRLP40313 264 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 ADIRFQ15847 76 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 LYZL1Q6UWQ5 148 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 AP1S3Q96PC3 154 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 SAMD10Q9BYL1 202 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 ALMS1Q8TCU4 4167 aa15.26■□□□□ 0.03
CLN3-234ENST00000568472 FOXA3P55318 350 aaPredicted RBP15.25■□□□□ 0.03
CLN3-234ENST00000568472 NEGR1Q7Z3B1 354 aa15.25■□□□□ 0.03
CLN3-234ENST00000568472 CNFNQ9BYD5 112 aa15.25■□□□□ 0.03
CLN3-234ENST00000568472 GFRA4Q9GZZ7 299 aa15.25■□□□□ 0.03
CLN3-234ENST00000568472 A0A087WWL8 130 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 MUC21A0A0G2JKD1 596 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 MUC21A0A140T8X8 626 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 K7EQD1 137 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 SMIM17P0DL12 118 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 SRIP30626 198 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 FAM74A4Q5TZK3 123 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 TSKUQ8WUA8 353 aa15.24■□□□□ 0.03
CLN3-234ENST00000568472 TRGC1P0CF51 173 aa15.23■□□□□ 0.03
CLN3-234ENST00000568472 OR10G8Q8NGN5 311 aa15.23■□□□□ 0.03
CLN3-234ENST00000568472 RAB4BP61018 213 aa15.22■□□□□ 0.03
CLN3-234ENST00000568472 SSTP61278 116 aa15.22■□□□□ 0.03
CLN3-234ENST00000568472 PNRC1Q12796 327 aaPredicted RBP15.22■□□□□ 0.03
CLN3-234ENST00000568472 ESRGQ1W209 222 aa15.22■□□□□ 0.03
CLN3-234ENST00000568472 GTSF1Q8WW33 167 aa15.22■□□□□ 0.03
CLN3-234ENST00000568472 DNAH1Q9P2D7 4330 aa15.22■□□□□ 0.03
CLN3-234ENST00000568472 NTF3P20783 257 aa15.21■□□□□ 0.03
CLN3-234ENST00000568472 Q6ZSN1 163 aa15.21■□□□□ 0.03
CLN3-234ENST00000568472 C14orf178Q8N769 122 aaPredicted RBP15.21■□□□□ 0.03
CLN3-234ENST00000568472 BORCS7Q96B45 105 aa15.21■□□□□ 0.03
CLN3-234ENST00000568472 LINC00588Q9Y4M8 146 aa15.21■□□□□ 0.03
CLN3-234ENST00000568472 V9GYV3 84 aa15.21■□□□□ 0.03
CLN3-234ENST00000568472 SACSQ9NZJ4 4579 aa15.21■□□□□ 0.03
CLN3-234ENST00000568472 TRBV10-1A0A0K0K1A3 114 aa15.2■□□□□ 0.02
CLN3-234ENST00000568472 LINC00862A6NCI5 91 aa15.19■□□□□ 0.02
CLN3-234ENST00000568472 TWIST1Q15672 202 aa15.19■□□□□ 0.02
CLN3-234ENST00000568472 UPK3BQ9BT76 320 aa15.19■□□□□ 0.02
CLN3-234ENST00000568472 MRPS16Q9Y3D3 137 aaKnown RBP15.19■□□□□ 0.02
CLN3-234ENST00000568472 KIF25-AS1Q9Y6Z4 181 aa15.19■□□□□ 0.02
CLN3-234ENST00000568472 TIRAPP58753 221 aa15.18■□□□□ 0.02
CLN3-234ENST00000568472 LYPD5Q6UWN5 251 aa15.18■□□□□ 0.02
CLN3-234ENST00000568472 SMIM15Q7Z3B0 74 aa15.18■□□□□ 0.02
CLN3-234ENST00000568472 MSRB1Q9NZV6 116 aa15.18■□□□□ 0.02
CLN3-234ENST00000568472 LOC100131303A0A0U1RQF7 123 aa15.17■□□□□ 0.02
CLN3-234ENST00000568472 TMEM218A2RU14 115 aa15.17■□□□□ 0.02
CLN3-234ENST00000568472 HIGD1CA8MV81 97 aa15.17■□□□□ 0.02
CLN3-234ENST00000568472 PPP1R2P9O14990 202 aa15.17■□□□□ 0.02
CLN3-234ENST00000568472 ZNF56Q15929 161 aa15.17■□□□□ 0.02
CLN3-234ENST00000568472 COMMD7Q86VX2 200 aa15.17■□□□□ 0.02
CLN3-234ENST00000568472 PGLYRP4Q96LB8 373 aa15.17■□□□□ 0.02
CLN3-234ENST00000568472 F5H697 171 aa15.16■□□□□ 0.02
CLN3-234ENST00000568472 ZNRF2Q8NHG8 242 aa15.16■□□□□ 0.02
CLN3-234ENST00000568472 NACAE9PAV3 2078 aa15.16■□□□□ 0.02
CLN3-234ENST00000568472 VPS13DQ5THJ4 4388 aa15.15■□□□□ 0.02
CLN3-234ENST00000568472 A0A1B0GUT8 65 aa15.15■□□□□ 0.02
CLN3-234ENST00000568472 LINC00315P59091 139 aa15.15■□□□□ 0.02
CLN3-234ENST00000568472 DPH3P1Q9H4G8 78 aa15.15■□□□□ 0.02
CLN3-234ENST00000568472 NAT8BQ9UHF3 227 aa15.15■□□□□ 0.02
CLN3-234ENST00000568472 RYR2Q92736 4967 aa15.15■□□□□ 0.02
CLN3-234ENST00000568472 H7C1H1 209 aa15.14■□□□□ 0.01
CLN3-234ENST00000568472 EVI2AP22794 236 aa15.14■□□□□ 0.01
CLN3-234ENST00000568472 RPL36AP83881 106 aaKnown RBP15.14■□□□□ 0.01
CLN3-234ENST00000568472 ATP6V0E2Q8NHE4 81 aa15.14■□□□□ 0.01
CLN3-234ENST00000568472 RPL36ALQ969Q0 106 aaKnown RBP15.14■□□□□ 0.01
CLN3-234ENST00000568472 SMIM27A0A1W2PRY6 76 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 GAGE12JA6NER3 117 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 F8W036 122 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 GAGE1Q13065 139 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 GAGE4Q13068 117 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 GAGE5Q13069 117 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 GAGE13Q4V321 117 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 Q9H8V8 135 aa15.13■□□□□ 0.01
CLN3-234ENST00000568472 TRBV7-3A0A075B6L6 115 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 MT-ND4LP03901 98 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 LINC00694P0DN24 101 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 RIGQ13278 110 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 NUP35Q8NFH5 326 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 ANAPC16Q96DE5 110 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 SEC11CQ9BY50 192 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 GTSF1LQ9H1H1 148 aa15.12■□□□□ 0.01
CLN3-234ENST00000568472 MGPP08493 103 aa15.11■□□□□ 0.01
CLN3-234ENST00000568472 RYR3Q15413 4870 aa15.1■□□□□ 0.01
CLN3-234ENST00000568472 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.1■□□□□ 0.01
CLN3-234ENST00000568472 HYDINQ4G0P3 5121 aa15.09■□□□□ 0.01
CLN3-234ENST00000568472 A0A087WWC5 75 aa15.09■□□□□ 0.01
CLN3-234ENST00000568472 A0A1B0GW15 77 aa15.09■□□□□ 0.01
CLN3-234ENST00000568472 FRZBQ92765 325 aa15.09■□□□□ 0.01
CLN3-234ENST00000568472 DNAJC30Q96LL9 226 aa15.09■□□□□ 0.01
CLN3-234ENST00000568472 Q9UF83 564 aa15.09■□□□□ 0.01
CLN3-234ENST00000568472 M0QY20 66 aa15.08■□□□□ 0
CLN3-234ENST00000568472 SIVA1O15304 175 aa15.08■□□□□ 0
CLN3-234ENST00000568472 IGLV2-18A0A075B6J9 118 aa15.07■□□□□ 0
CLN3-234ENST00000568472 TRAV8-6A0A0B4J262 113 aa15.07■□□□□ 0
CLN3-234ENST00000568472 UBE2D3P61077 147 aa15.07■□□□□ 0
CLN3-234ENST00000568472 UBE2D2P62837 147 aa15.07■□□□□ 0
CLN3-234ENST00000568472 TTC32Q5I0X7 151 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms