RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 RAB5CP51148 216 aa12.48□□□□□ -0.41
SMPD3-209ENST00000567223 SCO2A0A1W2PP80 73 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 GRIFINA4D1Z8 144 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 GAGE12JA6NER3 117 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 GAGE1Q13065 139 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 GAGE4Q13068 117 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 GAGE5Q13069 117 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 GAGE13Q4V321 117 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 TMUB2Q71RG4 321 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 C14orf178Q8N769 122 aaPredicted RBP12.47□□□□□ -0.41
SMPD3-209ENST00000567223 SSBP4Q9BWG4 385 aaPredicted RBP12.47□□□□□ -0.41
SMPD3-209ENST00000567223 MANBALQ9NQG1 85 aa12.47□□□□□ -0.41
SMPD3-209ENST00000567223 PSCAO43653 123 aa12.46□□□□□ -0.41
SMPD3-209ENST00000567223 EIF5AL1Q6IS14 154 aaKnown RBP12.46□□□□□ -0.41
SMPD3-209ENST00000567223 C11orf52Q96A22 123 aa12.46□□□□□ -0.41
SMPD3-209ENST00000567223 Q9UF83 564 aa12.46□□□□□ -0.41
SMPD3-209ENST00000567223 SNAI2O43623 268 aa12.45□□□□□ -0.42
SMPD3-209ENST00000567223 TOR2AQ5JU69 321 aa12.45□□□□□ -0.42
SMPD3-209ENST00000567223 BAGE2Q86Y30 109 aa12.45□□□□□ -0.42
SMPD3-209ENST00000567223 TM2D2Q9BX73 214 aa12.45□□□□□ -0.42
SMPD3-209ENST00000567223 TRAV8-3A0A0A6YYJ7 113 aa12.44□□□□□ -0.42
SMPD3-209ENST00000567223 M0R381 172 aa12.44□□□□□ -0.42
SMPD3-209ENST00000567223 OR5AL1P0C617 328 aa12.44□□□□□ -0.42
SMPD3-209ENST00000567223 XGP55808 180 aa12.44□□□□□ -0.42
SMPD3-209ENST00000567223 FAM74A4Q5TZK3 123 aa12.44□□□□□ -0.42
SMPD3-209ENST00000567223 OR10G8Q8NGN5 311 aa12.44□□□□□ -0.42
SMPD3-209ENST00000567223 CHCHD7Q9BUK0 85 aa12.44□□□□□ -0.42
SMPD3-209ENST00000567223 IGHV3-30P01768 117 aa12.43□□□□□ -0.42
SMPD3-209ENST00000567223 IGHV3-33P01772 117 aa12.43□□□□□ -0.42
SMPD3-209ENST00000567223 IGHV3-30-3P0DP02 117 aa12.43□□□□□ -0.42
SMPD3-209ENST00000567223 IGHV3-30-5P0DP03 117 aa12.43□□□□□ -0.42
SMPD3-209ENST00000567223 TCTE3Q8IZS6 198 aa12.43□□□□□ -0.42
SMPD3-209ENST00000567223 Q8N814 137 aa12.43□□□□□ -0.42
SMPD3-209ENST00000567223 SMIM12Q96EX1 92 aa12.43□□□□□ -0.42
SMPD3-209ENST00000567223 TRBV7-3A0A075B6L6 115 aa12.42□□□□□ -0.42
SMPD3-209ENST00000567223 A0A087WWL8 130 aa12.42□□□□□ -0.42
SMPD3-209ENST00000567223 TMSB15BA0A087X1C1 80 aa12.42□□□□□ -0.42
SMPD3-209ENST00000567223 GCSHP23434 173 aa12.42□□□□□ -0.42
SMPD3-209ENST00000567223 RPL35P42766 123 aaKnown RBP12.42□□□□□ -0.42
SMPD3-209ENST00000567223 KRTAP10-1P60331 282 aa12.42□□□□□ -0.42
SMPD3-209ENST00000567223 RAB4BP61018 213 aa12.42□□□□□ -0.42
SMPD3-209ENST00000567223 COX11Q9Y6N1 276 aa12.42□□□□□ -0.42
SMPD3-209ENST00000567223 TEX46H3BTG2 121 aa12.41□□□□□ -0.42
SMPD3-209ENST00000567223 UBE2D3P61077 147 aa12.41□□□□□ -0.42
SMPD3-209ENST00000567223 UBE2D2P62837 147 aa12.41□□□□□ -0.42
SMPD3-209ENST00000567223 RPL36AP83881 106 aaKnown RBP12.41□□□□□ -0.42
SMPD3-209ENST00000567223 PRR27Q6MZM9 219 aa12.41□□□□□ -0.42
SMPD3-209ENST00000567223 RPL36ALQ969Q0 106 aaKnown RBP12.41□□□□□ -0.42
SMPD3-209ENST00000567223 A0A1B0GV50 99 aa12.4□□□□□ -0.42
SMPD3-209ENST00000567223 FUSP35637 526 aaKnown RBP eCLIP12.4□□□□□ -0.42
SMPD3-209ENST00000567223 SULT1A2P50226 295 aa12.4□□□□□ -0.42
SMPD3-209ENST00000567223 NIT1Q86X76 327 aa12.4□□□□□ -0.42
SMPD3-209ENST00000567223 OR10AG1Q8NH19 301 aa12.4□□□□□ -0.42
SMPD3-209ENST00000567223 TMEM70Q9BUB7 260 aa12.4□□□□□ -0.42
SMPD3-209ENST00000567223 Q9HAA7 133 aa12.4□□□□□ -0.42
SMPD3-209ENST00000567223 C1QBP02746 253 aa12.39□□□□□ -0.43
SMPD3-209ENST00000567223 CCL20P78556 96 aa12.39□□□□□ -0.43
SMPD3-209ENST00000567223 RPL19P84098 196 aaKnown RBP12.39□□□□□ -0.43
SMPD3-209ENST00000567223 GNG13Q9P2W3 67 aa12.39□□□□□ -0.43
SMPD3-209ENST00000567223 IGLV5-52A0A0A0MRZ9 124 aa12.38□□□□□ -0.43
SMPD3-209ENST00000567223 DAZ4Q86SG3 579 aaKnown RBP12.38□□□□□ -0.43
SMPD3-209ENST00000567223 Q8N3U1 123 aa12.38□□□□□ -0.43
SMPD3-209ENST00000567223 DAZ3Q9NR90 486 aaKnown RBP12.38□□□□□ -0.43
SMPD3-209ENST00000567223 URGCP-MRPS24S4R325 110 aa12.38□□□□□ -0.43
SMPD3-209ENST00000567223 PDE6DO43924 150 aa12.37□□□□□ -0.43
SMPD3-209ENST00000567223 MEF2BQ02080 365 aaPredicted RBP12.37□□□□□ -0.43
SMPD3-209ENST00000567223 ATRAIDQ6UW56 229 aa12.37□□□□□ -0.43
SMPD3-209ENST00000567223 EPM2AB3EWF7 344 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 IGLV2-8P01709 118 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 ELOBQ15370 118 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 SPANXN1Q5VSR9 72 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 SLC51BQ86UW2 128 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 RMI2Q96E14 147 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 DERL1Q9BUN8 251 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 KIF25-AS1Q9Y6Z4 181 aa12.36□□□□□ -0.43
SMPD3-209ENST00000567223 C19orf71A6NCJ1 209 aa12.35□□□□□ -0.43
SMPD3-209ENST00000567223 IGLC6P0CF74 106 aa12.35□□□□□ -0.43
SMPD3-209ENST00000567223 TAGLN2P37802 199 aaKnown RBP12.35□□□□□ -0.43
SMPD3-209ENST00000567223 CENPWQ5EE01 88 aa12.35□□□□□ -0.43
SMPD3-209ENST00000567223 NEXN-AS1Q8NBZ9 246 aa12.35□□□□□ -0.43
SMPD3-209ENST00000567223 VAX2Q9UIW0 290 aa12.35□□□□□ -0.43
SMPD3-209ENST00000567223 FAT1Q14517 4588 aa12.35□□□□□ -0.43
SMPD3-209ENST00000567223 TRBV6-8A0A0A6YYG3 113 aa12.34□□□□□ -0.43
SMPD3-209ENST00000567223 IFNA1P01562 189 aa12.34□□□□□ -0.43
SMPD3-209ENST00000567223 RPS20P60866 119 aaKnown RBP12.34□□□□□ -0.43
SMPD3-209ENST00000567223 AP1S3Q96PC3 154 aa12.34□□□□□ -0.43
SMPD3-209ENST00000567223 A0A087WX48 190 aa12.33□□□□□ -0.44
SMPD3-209ENST00000567223 PKIAP61925 76 aa12.33□□□□□ -0.44
SMPD3-209ENST00000567223 ZNF56Q15929 161 aa12.33□□□□□ -0.44
SMPD3-209ENST00000567223 TMEM97Q5BJF2 176 aa12.33□□□□□ -0.44
SMPD3-209ENST00000567223 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.33□□□□□ -0.44
SMPD3-209ENST00000567223 BIN3Q9NQY0 253 aa12.33□□□□□ -0.44
SMPD3-209ENST00000567223 BCL2P10415 239 aa12.32□□□□□ -0.44
SMPD3-209ENST00000567223 GNG4P50150 75 aa12.32□□□□□ -0.44
SMPD3-209ENST00000567223 Q0VG73 95 aa12.32□□□□□ -0.44
SMPD3-209ENST00000567223 RBFOX3A6NFN3 312 aa12.31□□□□□ -0.44
SMPD3-209ENST00000567223 F2Z2F3 143 aa12.31□□□□□ -0.44
SMPD3-209ENST00000567223 WFDC2Q14508 124 aa12.31□□□□□ -0.44
SMPD3-209ENST00000567223 KCNIP4Q6PIL6 250 aa12.31□□□□□ -0.44
SMPD3-209ENST00000567223 Q6ZNX1 250 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms