RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 KLF12Q9Y4X4 402 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 A8MWP6 167 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 ATP5L2Q7Z4Y8 100 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 TP53TG3Q9ULZ0 132 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 LENEPQ9Y5L5 61 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 CELSR2Q9HCU4 2923 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 F8W735 103 aaPredicted RBP6.93□□□□□ -1.3
VPS39-205ENST00000562258 HBDP02042 147 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 IGHV4-30-4P0DP06 118 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 GCSHP23434 173 aa6.93□□□□□ -1.3
VPS39-205ENST00000562258 ZFAND6Q6FIF0 208 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 Q6ZTI0 123 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 UBE2WQ96B02 151 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 TRBV25-1A0A075B6N4 114 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 COLCA2A8K830 154 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 LINC00587B1AMM8 73 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 LAGE3Q14657 143 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 TRPT1Q86TN4 253 aaKnown RBP6.92□□□□□ -1.3
VPS39-205ENST00000562258 V9GYV3 84 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 TRAV9-1A0A075B6T8 112 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 TYMSP04818 313 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 C16orf74Q96GX8 76 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 DMDP11532 3685 aa6.92□□□□□ -1.3
VPS39-205ENST00000562258 TRBV24-1A0A075B6N3 115 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 ZNF80P51504 273 aaPredicted RBP6.91□□□□□ -1.3
VPS39-205ENST00000562258 CCL18P55774 89 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 FAM104BQ5XKR9 115 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 C9orf47Q6ZRZ4 202 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 G3V4G9 280 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 PSMB2P49721 201 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 LURAP1LQ8IV03 231 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 RETNQ9HD89 108 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 RELNP78509 3460 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 IGLV10-54A0A075B6I4 117 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 RBAKDNA6NC62 111 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 RHOHQ15669 191 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 MRPL51Q4U2R6 128 aaKnown RBP6.91□□□□□ -1.3
VPS39-205ENST00000562258 IFI27L1Q96BM0 104 aa6.91□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BKO60814 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 IGHV3-30P01768 117 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 IGHV3-33P01772 117 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BJP06899 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 IGHV3-30-3P0DP02 117 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 IGHV3-30-5P0DP03 117 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BOP23527 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BBP33778 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BDP58876 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BCP62807 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST2H2BEQ16778 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BHQ93079 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 ZNF625Q96I27 306 aaPredicted RBP6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BNQ99877 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HIST1H2BMQ99879 126 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 HHLA3Q9XRX5 114 aa6.9□□□□□ -1.3
VPS39-205ENST00000562258 IGKV2D-24A0A075B6R9 120 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 H3BRM9 83 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 SLAQ13239 276 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 CIRBPQ14011 172 aaKnown RBP6.9□□□□□ -1.31
VPS39-205ENST00000562258 HOXA5P20719 270 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 PKIAP61925 76 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 C6orf226Q5I0X4 101 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 TEX43Q6ZNM6 134 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 SMIM12Q96EX1 92 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 TMEM243Q9BU79 118 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 CBY1Q9Y3M2 126 aa6.9□□□□□ -1.31
VPS39-205ENST00000562258 TRAV26-1A0A087WT03 109 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 BRI3O95415 125 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 ODF3L2Q3SX64 289 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 C14orf144Q96I85 54 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 SPATA25Q9BR10 227 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 TP53TG1Q9Y2A0 90 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 NPYP01303 97 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 ZNF25P17030 456 aaPredicted RBP6.89□□□□□ -1.31
VPS39-205ENST00000562258 CKS1BP61024 79 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 MRPL23Q16540 153 aaKnown RBP6.89□□□□□ -1.31
VPS39-205ENST00000562258 M0R143 59 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 SNCGO76070 127 aa6.89□□□□□ -1.31
VPS39-205ENST00000562258 RPL39LQ96EH5 51 aaKnown RBP6.89□□□□□ -1.31
VPS39-205ENST00000562258 FRMD6-AS1P0C7T7 363 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 DDTP30046 118 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 ATP6V0E2Q8NHE4 81 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 ALKBH7Q9BT30 221 aaPredicted RBP6.88□□□□□ -1.31
VPS39-205ENST00000562258 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.88□□□□□ -1.31
VPS39-205ENST00000562258 DEFB131BA0A096LNP1 70 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 IGKV2-29A2NJV5 120 aaPredicted RBP6.88□□□□□ -1.31
VPS39-205ENST00000562258 C2orf66Q6UXQ4 117 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 FAM231DQ6ZW35 169 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 C16orf95Q9H693 158 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 NBEAL2Q6ZNJ1 2754 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 A0A087X0K7 114 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 TMEM263Q8WUH6 116 aaKnown RBP6.88□□□□□ -1.31
VPS39-205ENST00000562258 HIST1H4GQ99525 98 aa6.88□□□□□ -1.31
VPS39-205ENST00000562258 HINT1P49773 126 aaPredicted RBP6.87□□□□□ -1.31
VPS39-205ENST00000562258 LINC00322Q6ZN03 302 aaPredicted RBP6.87□□□□□ -1.31
VPS39-205ENST00000562258 GFRA4Q9GZZ7 299 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 TRAV8-2A0A0B4J237 113 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 A0A1B0GV90 55 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 I3L3M4 83 aa6.87□□□□□ -1.31
VPS39-205ENST00000562258 IGLV1-51P01701 117 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 160.8 ms