RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 PRSS33Q8NF86 280 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 FGF23Q9GZV9 251 aaPredicted RBP10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 FAM236AA0A1B0GUQ0 79 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 FAM236BA0A1B0GV22 79 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 APRG1Q8IVJ8 170 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 GTSF1Q8WW33 167 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 SPRY2O43597 315 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 RPL18AQ02543 176 aaKnown RBP10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 Q71RC1 249 aaPredicted RBP10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 RNASE8Q8TDE3 154 aaKnown RBP10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 CHKB-CPT1BH3BT56 60 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 TIRAPP58753 221 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 FOXI1Q12951 378 aa10.22□□□□□ -0.77
CSPG4P11-201ENST00000560634 NOTCH2Q04721 2471 aa10.21□□□□□ -0.77
CSPG4P11-201ENST00000560634 IGKV3D-7A0A0C4DH55 119 aa10.21□□□□□ -0.77
CSPG4P11-201ENST00000560634 TMEM89A2RUT3 159 aa10.21□□□□□ -0.77
CSPG4P11-201ENST00000560634 TDRG1Q3Y452 100 aa10.21□□□□□ -0.77
CSPG4P11-201ENST00000560634 Q8N9W7 124 aa10.21□□□□□ -0.77
CSPG4P11-201ENST00000560634 IGHV4-4A0A075B6R2 117 aa10.21□□□□□ -0.78
CSPG4P11-201ENST00000560634 SLURP1P55000 103 aa10.21□□□□□ -0.78
CSPG4P11-201ENST00000560634 DEFB136Q30KP8 78 aa10.21□□□□□ -0.78
CSPG4P11-201ENST00000560634 BAALCQ8WXS3 180 aa10.21□□□□□ -0.78
CSPG4P11-201ENST00000560634 PLXNA4Q9HCM2 1894 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 TAX1BP3O14907 124 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV4-61A0A0C4DH41 118 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 GPHB5Q86YW7 130 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 Q8N1Y9 231 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 WFDC9Q8NEX5 89 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 BLCAPP62952 87 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 TTC28Q96AY4 2481 aa10.2□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGLV10-54A0A075B6I4 117 aa10.19□□□□□ -0.78
CSPG4P11-201ENST00000560634 LGALS9O00182 355 aa10.19□□□□□ -0.78
CSPG4P11-201ENST00000560634 PLA2G2EQ9NZK7 142 aa10.19□□□□□ -0.78
CSPG4P11-201ENST00000560634 LECT2O14960 151 aa10.19□□□□□ -0.78
CSPG4P11-201ENST00000560634 RPL39P62891 51 aaKnown RBP10.19□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGLV2-23P01705 113 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 ODF1Q14990 250 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 C5orf56Q8N8D9 126 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 SPG11Q96JI7 2443 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 HIGD2BQ4VC39 106 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 CACNA1AO00555 2505 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV4-28A0A0C4DH34 117 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV1-58A0A0C4DH39 117 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGLV1-47P01700 117 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 ZSWIM8A7E2V4 1837 aa10.18□□□□□ -0.78
CSPG4P11-201ENST00000560634 TMEM256-PLSCR3K7ERE1 68 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 PRAC2D3DTV9 90 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 G3V4G9 280 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 SPATA12Q7Z6I5 190 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 DIRC1Q969H9 104 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 C2orf70A6NJV1 201 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 TEX22C9J3V5 150 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV4-38-2P0DP08 117 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 C20orf203Q8NBC4 194 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 TM2D2Q9BX73 214 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 TRBV10-1A0A0K0K1A3 114 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 DEFB113Q30KQ7 82 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 TTTY13Q9BZ97 58 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 HHLA3Q9XRX5 114 aa10.17□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGF2-ASQ6U949 168 aa10.16□□□□□ -0.78
CSPG4P11-201ENST00000560634 TMEM61Q8N0U2 210 aa10.16□□□□□ -0.78
CSPG4P11-201ENST00000560634 FNDC1Q4ZHG4 1894 aaPredicted RBP10.16□□□□□ -0.78
CSPG4P11-201ENST00000560634 SPAG11BQ08648 103 aa10.16□□□□□ -0.78
CSPG4P11-201ENST00000560634 LINC00643Q86TS7 51 aa10.16□□□□□ -0.78
CSPG4P11-201ENST00000560634 RITA1Q96K30 269 aa10.16□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV3-30P01768 117 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV3-33P01772 117 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV3-30-3P0DP02 117 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 IGHV3-30-5P0DP03 117 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 GRNP28799 593 aaKnown RBP10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 SPRNQ5BIV9 151 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 C10orf105Q8TEF2 133 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 C19orf71A6NCJ1 209 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 CLPSL1A2RUU4 121 aa10.15□□□□□ -0.78
CSPG4P11-201ENST00000560634 BDP1A6H8Y1 2624 aa10.15□□□□□ -0.79
CSPG4P11-201ENST00000560634 IGHV4-30-2A0A087WSY4 118 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 MYCNOSP40205 109 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 MIR7-3HGQ8N6C7 128 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 DAND5Q8N907 189 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 WDR81Q562E7 1941 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 IGHV4OR15-8A0A075B7B6 117 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 A0A087WW49 117 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 SPATA25Q9BR10 227 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 CRYGBP07316 175 aa10.14□□□□□ -0.79
CSPG4P11-201ENST00000560634 SONP18583 2426 aaKnown RBP10.13□□□□□ -0.79
CSPG4P11-201ENST00000560634 UBE2AP49459 152 aa10.13□□□□□ -0.79
CSPG4P11-201ENST00000560634 PROP1O75360 226 aa10.12□□□□□ -0.79
CSPG4P11-201ENST00000560634 C14orf132Q9NPU4 83 aa10.12□□□□□ -0.79
CSPG4P11-201ENST00000560634 MGAMO43451 1857 aa10.12□□□□□ -0.79
CSPG4P11-201ENST00000560634 DAZAP2Q15038 168 aaPredicted RBP10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 NDUFA11Q86Y39 141 aa10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 PRO0255Q9UI72 69 aa10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 TRAV26-1A0A087WT03 109 aa10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 A0A0J9YX75 114 aa10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 CLEC2BQ92478 149 aa10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 TRBV12-3P01733 135 aa10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 MYLKQ15746 1914 aa10.11□□□□□ -0.79
CSPG4P11-201ENST00000560634 PRB1P04280 392 aa10.1□□□□□ -0.79
CSPG4P11-201ENST00000560634 TMEM263Q8WUH6 116 aaKnown RBP10.1□□□□□ -0.79
CSPG4P11-201ENST00000560634 SORL1Q92673 2214 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms